PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584684.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 245aa    MW: 27626.7 Da    PI: 8.8563
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584684.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.65.2e-322477255
         G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    prlrWtpeLH++Fv+av+ LGG+ kAtPk +l++m+v+gLt++hvkSHLQ+YR 
  XP_013584684.1 24 PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVQGLTISHVKSHLQMYRG 77
                    8****************************************************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.1682080IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-292077IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-222476IPR006447Myb domain, plants
SuperFamilySSF466894.12E-152476IPR009057Homeodomain-like
PfamPF002497.2E-82576IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGKCGRSSDG GISGVRPYVR SPVPRLRWTP ELHRSFVHAV DLLGGQYKAT PKLVLKIMDV  60
QGLTISHVKS HLQMYRGSRP TLLGRQESSS SSSRRRRRQD NGDQLHDNLS EHARNDCLFG  120
FHSFNFREQN SGTDNDDDDF LNIMNMARTK TFAGNGESIK FQPYHFLEAQ SMKSNMGNEH  180
EEEELSLSLS LNHPPNHQQR WRSNASSSLS EASEAVSSPF TSRDCFASSK IDLNLNLSFP  240
SLLRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-202579357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-202579357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-202579357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-202579357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013584684.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304860.0AJ630486.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g14600.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584684.10.0PREDICTED: putative Myb family transcription factor At1g14600 isoform X2
RefseqXP_013696213.10.0putative Myb family transcription factor At1g14600 isoform X2
SwissprotQ700D91e-117MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A0D3CA671e-148A0A0D3CA67_BRAOL; Uncharacterized protein
STRINGBo5g019810.11e-148(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.11e-102G2-like family protein