PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584623.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 405aa    MW: 46587.6 Da    PI: 4.6743
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584623.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.55.8e-35611532103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+++ed+++++++sws+ +nsf+v+d++ f++++Lp++Fkh+nf+SF RQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  XP_013584623.1  61 FLTKTYDLVEDSRTNHVVSWSQAKNSFIVWDPQAFSTSLLPRFFKHNNFSSFARQLNTYGFRKVNPDR---------WEFANEGFLRGQKHLLKT 146
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  XP_013584623.1 147 IRRRKTS 153
                     ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.43E-3456150IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.0E-3857150IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.3E-5757150IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.4E-3161150IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-186184IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-1899111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-18112124IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDPSYRFIKE EFPTGFIVSP SPPSSSTYSY LYSTSMAPND PTTSSSPQPI EGLHESGPPP  60
FLTKTYDLVE DSRTNHVVSW SQAKNSFIVW DPQAFSTSLL PRFFKHNNFS SFARQLNTYG  120
FRKVNPDRWE FANEGFLRGQ KHLLKTIRRR KTSNNNQIQP PQSSSQEHSL DNCCIEVGRY  180
DLDGEMDSLK QDKQVLVMEL VKLRHQQEST KVYLKLIEEK LKKTESKQQQ MMSFLARAMQ  240
NPDFLQQLME QKEKRKEMEE AISKKRQRPI DQGTRNVVTV EDYDDDDSGA RGGYGRYGND  300
AGSTSAYMKQ EMYGDLSGFE MPELDSLAMH IQGLGDQFTR KEVLDVEKRD EEGEQEGYQK  360
VNNEIYGEGF WEDMLNEGQN FDFEGDEENV DVLIEQLGYL GSSSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-245615312123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013584623.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584623.10.0PREDICTED: heat stress transcription factor A-6b-like
RefseqXP_013695886.10.0heat stress transcription factor A-6b-like
SwissprotQ9LUH80.0HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0D3CH320.0A0A0D3CH32_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EKM80.0A0A3P6EKM8_BRAOL; Uncharacterized protein
STRINGBo5g093470.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.10.0heat shock transcription factor A6B