PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013584613.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 400aa MW: 46065.8 Da PI: 5.8723 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.9 | 1.6e-12 | 215 | 257 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er+RR+riN+++ Lr ++P+ +K++K +L Av+YI++L XP_013584613.1 215 HSERKRRERINQRIYALRAVVPNV-----TKMNKNGTLSDAVDYINQL 257 57*********************8.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.8E-15 | 12 | 154 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 1.7E-15 | 206 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.44E-12 | 206 | 262 | No hit | No description |
PROSITE profile | PS50888 | 15.574 | 208 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-13 | 214 | 263 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.9E-14 | 215 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-10 | 215 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MMMMRGGERV KEFLRPFVDS REWDFCVIWK LGDDPSTFIE WVGCCCSGSY IDKNIKHEHV 60 EEETQNTSSI CRDEDNKHHI RSLACEALSR FPLFMPLYPG IHGEVVMSKS PKWLVNSGPG 120 SKQDIFSTRV LVPVRDGLVE LFSFIMKPVD ESMVDLIISH CNTFFEPYPE QTLPFRIISK 180 AEESMLMHKE EDVVMQNAID DKKVAKENFK SKNLHSERKR RERINQRIYA LRAVVPNVTK 240 MNKNGTLSDA VDYINQLLVE KQKLEDELRG INEIESRRIA AEEESAIANP QAEKVASRLN 300 KIVNSEVNLE VHETGERGFL IRIAQEHKQD GFIRLIETVD SCGLEIIDVN FTRLDLRVMT 360 VLNVKATKDG TTPENLRDLL IKMMMRTSEN PNAESLRQYT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 216 | 221 | ERKRRE |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013584613.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584613.1 | 0.0 | PREDICTED: transcription factor bHLH90 isoform X2 | ||||
Swissprot | Q0WNR2 | 0.0 | BH090_ARATH; Transcription factor bHLH90 | ||||
TrEMBL | A0A0D3C946 | 0.0 | A0A0D3C946_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g012130.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10610.1 | 0.0 | bHLH family protein |