PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584558.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 258aa    MW: 29837.9 Da    PI: 6.554
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584558.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.92e-23114174259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg+ WrKYGqK++k+s++ rsYY+C+++   +C++kk+v+  +++p +  +tY g+H+++
  XP_013584558.1 114 HDGFLWRKYGQKQIKESDHQRSYYKCAYTndqKCEAKKQVQMIQNNPPLYSTTYFGRHTCQ 174
                     6**************************988889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-23106174IPR003657WRKY domain
PROSITE profilePS5081119.428108176IPR003657WRKY domain
SuperFamilySSF1182909.02E-23110175IPR003657WRKY domain
SMARTSM007743.6E-33113175IPR003657WRKY domain
PfamPF031067.1E-23115174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MESCQQKVME KLLHGHGCAS QLKLIMDHHA ESDSSMERED LAKSVLHCFS DALSILIDTN  60
DHNKDDDKSN NSSPQDSSHV LESSRKPFHK RGRKTSMAES SDYRRHESPN PIYHDGFLWR  120
KYGQKQIKES DHQRSYYKCA YTNDQKCEAK KQVQMIQNNP PLYSTTYFGR HTCQLHQAFE  180
TFPIDTSDLQ DSRMIRFDNP DSSTHQHQNQ IIHHKVEQMM PSEKAEEWSS PSEYMSSEVA  240
YAVEAFGFNP ARTSSDLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-141151741069OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00070PBMTransfer from AT5G01900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013584558.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300690.0KF430069.1 Brassica rapa WRKY transcription factor 62 (WRKY62) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584558.10.0PREDICTED: probable WRKY transcription factor 62
SwissprotQ9LZV61e-133WRK62_ARATH; Probable WRKY transcription factor 62
TrEMBLA0A0D3CF920.0A0A0D3CF92_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F2X40.0A0A3P6F2X4_BRAOL; Uncharacterized protein
STRINGBo5g068250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145051522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.11e-121WRKY DNA-binding protein 62