PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584528.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 276aa    MW: 31930.3 Da    PI: 6.4604
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584528.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.6e-1876126656
                     S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++  eq+++Le+ Fe  ++++ e++ +LAk lg++ rq+ +WFqNrRa++k
  XP_013584528.1  76 RLPLEQVKVLEKSFELGNKLDPERKIQLAKALGMQPRQIAIWFQNRRARWK 126
                     45569*********************************************9 PP
2HD-ZIP_I/II125.42.5e-4072163192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl  eqvk+LE+sFe  +kL+perK +la++Lg+qprq+a+WFqnrRAR+kt+qlE+dy++Lk+++d+lk++n++L +++++L  e++
  XP_013584528.1  72 EKKRRLPLEQVKVLEKSFELGNKLDPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFDSLKSDNDSLLAHNKKLLVEVM 163
                     69************************************************************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.35E-1966130IPR009057Homeodomain-like
SMARTSM003891.5E-1971132IPR001356Homeobox domain
PROSITE profilePS5007116.14772128IPR001356Homeobox domain
CDDcd000862.54E-1773129No hitNo description
Gene3DG3DSA:1.10.10.602.4E-1976136IPR009057Homeodomain-like
PfamPF000462.2E-1576126IPR001356Homeobox domain
PRINTSPR000312.9E-599108IPR000047Helix-turn-helix motif
PROSITE patternPS000270103126IPR017970Homeobox, conserved site
PRINTSPR000312.9E-5108124IPR000047Helix-turn-helix motif
PfamPF021831.6E-15129168IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MAFPQHGFTF QQLHEDISPD QLPSCLPPHP FNGGGNYMMN RSMSLTNVRD DPHQSVDEEN  60
LSDDGSHMML GEKKRRLPLE QVKVLEKSFE LGNKLDPERK IQLAKALGMQ PRQIAIWFQN  120
RRARWKTRQL ERDYDSLKKQ FDSLKSDNDS LLAHNKKLLV EVMSLKNKDY NEASIIKREA  180
EASWSNNGST ENSSDINLEI PRETTTTHVN TIKNLFPSSI PSSTHHQDHH GDHHHQNNEM  240
VQEESFCNMF NGIDETTSAG YWGWSDPNYN HHHQFN
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed 3 day after germination (DAG) in first rosette leaf primordia around the veins in the apical part of the leaf and close to the midvein in the basal part of the leaf. At later stage, expressed in new forming veins, and veins and fascicular cambium of mature leaves. {ECO:0000269|PubMed:12644682}.
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013584528.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584528.10.0PREDICTED: homeobox-leucine zipper protein ATHB-20-like
SwissprotQ8LAT01e-162ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A0D3CNG00.0A0A0D3CNG0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FZG90.0A0A3P6FZG9_BRAOL; Uncharacterized protein (Fragment)
STRINGBo5g156340.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.11e-159homeobox protein 20