PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584487.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 689aa    MW: 78016.2 Da    PI: 5.7659
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584487.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.68e-172979656
                    S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++t++q++ Le++F+++++p++++r+   + l+L  +qVk+WFqN+R++ k
  XP_013584487.1 29 RHTPQQIQKLEAYFKECPHPNESQRQAFCDVLNLGIDQVKFWFQNKRTQSK 79
                    689*********************************************988 PP
2START110.52.6e-352104343206
                     HHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                     a +a +el ++   +e +Wv ss   +  + +e++ kf+ s         ++e +++++vv+ +++ l   +ld+  +W+  ++    +a+t+ +
  XP_013584487.1 210 AATAVEELKRLFRTDESLWVMSSidrTYVIDQESYEKFSHSIKhfrnlsARVESSKDITVVPIEATSLIDMFLDSE-KWKMLFPtivnEAKTIHT 303
                     6788899999999**********988777788888888776668899999****************9999999999.99999988888******* PP

                     ECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  85 issg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     + s        ++lq++  +l  lsplvp R+f++vR+++q g+g w+i+dvS ds+  +++++ +  + ++pSg+li++++n h++v w+ehv+
  XP_013584487.1 304 LGSElpinencNVLQVIWEQLHILSPLVPpREFMIVRCCQQIGEGLWIIADVSQDSQHIVNSDQASPSCYKRPSGCLIRSLPNAHTEVRWIEHVE 398
                     ************************************************************99888888899************************ PP

                     --SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     ++  +  h ++r lv+ +   ga++w  tl+r ce+
  XP_013584487.1 399 VDHTTDtHKMYRELVSGSSGYGARRWIVTLERMCER 434
                     ****999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-16679IPR009057Homeodomain-like
SuperFamilySSF466896.84E-16981IPR009057Homeodomain-like
SMARTSM003898.8E-132185IPR001356Homeobox domain
PROSITE profilePS5007114.8682181IPR001356Homeobox domain
CDDcd000861.06E-122881No hitNo description
PfamPF000462.5E-142979IPR001356Homeobox domain
PROSITE profilePS5084838.57199437IPR002913START domain
SuperFamilySSF559613.3E-25200435No hitNo description
CDDcd088752.00E-88204433No hitNo description
SMARTSM002344.3E-19208434IPR002913START domain
PfamPF018528.5E-29210434IPR002913START domain
Gene3DG3DSA:3.30.530.203.4E-6210400IPR023393START-like domain
SuperFamilySSF559613.02E-8456649No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MDYDGDGSPD NEHYTSVNAM SKEKRICHRH TPQQIQKLEA YFKECPHPNE SQRQAFCDVL  60
NLGIDQVKFW FQNKRTQSKA QDERTSNMLL REENEKLRLE NAAMIEVLKN VTCPPCGGPP  120
FGRDDRESNL HKMRLENAFF KTERDSLAAA NNKNQQTMLD SLTSVQRQQT FEALTSYGMN  180
PYNQPSSLES QTIQPQLLPQ MDIPQLSETA ATAVEELKRL FRTDESLWVM SSIDRTYVID  240
QESYEKFSHS IKHFRNLSAR VESSKDITVV PIEATSLIDM FLDSEKWKML FPTIVNEAKT  300
IHTLGSELPI NENCNVLQVI WEQLHILSPL VPPREFMIVR CCQQIGEGLW IIADVSQDSQ  360
HIVNSDQASP SCYKRPSGCL IRSLPNAHTE VRWIEHVEVD HTTDTHKMYR ELVSGSSGYG  420
ARRWIVTLER MCERMALSSI LIMPATDWSE TIPTVEGRRS VMKLGERMLK IFNEMLIMSG  480
KVEFPQQSKC GVRISIRMNM EPGQLPGLVV SAASCLSIPL TPLQVFNCLR SNDTRHQWDV  540
LCRGNAITET ARIFTGSSGT NCINLLQPTP PWDIGQNMVQ EPHKKMMVLQ ECYMDALGGM  600
IVYSPLDMAT MSIAASGEVD PLKIPILPSG FTISSDNSEG TLLMLAFQIL NSDENSKTRS  660
VSEIAVDRVS RLISQTVQSI KLMLNCPPE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the embryo at early stage and in the endosperm. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013584487.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584487.10.0PREDICTED: homeobox-leucine zipper protein HDG8
SwissprotQ9M9P40.0HDG8_ARATH; Homeobox-leucine zipper protein HDG8
TrEMBLA0A0D3CN310.0A0A0D3CN31_BRAOL; Uncharacterized protein
STRINGBo5g150100.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM127911530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.10.0homeodomain GLABROUS 8