PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013584451.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GeBP | ||||||||
Protein Properties | Length: 361aa MW: 40035.9 Da PI: 5.3758 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 115.7 | 2.6e-36 | 101 | 197 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidf.kaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 lfqrlw++eDei lL+G++d+ ++++g s d+ fye++k++++++++k+qlveK+rrLKkK+++ ++k sgke+ f+++hdq++fe+s+ki XP_013584451.1 101 LFQRLWTDEDEIELLRGFLDYvTTHRGGSNPPDTAPFYEMIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKFGSGKEVLFKSPHDQSTFEISRKI 195 79*******************88889989999*************************************************************** PP DUF573 96 Wg 97 W+ XP_013584451.1 196 WN 197 *7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.7E-33 | 102 | 197 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MTSDHRDAVF SIDSPDHEGG GAGDGGESDT DDDVALPETN DDLNSPYNVT VALPSGSAVP 60 VSAIPADSSP KWRRATEIVH RRQQQPPPPP PAAAIDDSRR LFQRLWTDED EIELLRGFLD 120 YVTTHRGGSN PPDTAPFYEM IKSKLQLEFN KNQLVEKLRR LKKKYRNVMS KFGSGKEVLF 180 KSPHDQSTFE ISRKIWNRTG KIIGFEMDFE EANVNDNSPG SNPSAAVEIE SENGVEKKGS 240 RKRSRSRIGK IEEDNNVNVN ETVSASIGGL IEETVRSCVS PLIKEMMNGT TSMMMAGSLG 300 PVLTRPLGYG VEGAGGNKGV RDERWRKQLI LELEVYSRRL ELVQEEIRAT LHELKTMPSG 360 V |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 241 | 246 | KRSRSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013584451.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584451.1 | 0.0 | PREDICTED: mediator-associated protein 1-like | ||||
Refseq | XP_013746428.1 | 0.0 | probable transcription factor At3g04930 isoform X3 | ||||
Refseq | XP_022567160.1 | 0.0 | probable transcription factor At3g04930 isoform X1 | ||||
Refseq | XP_022567161.1 | 0.0 | probable transcription factor At3g04930 isoform X2 | ||||
Swissprot | Q9CAV7 | 1e-157 | STKLJ_ARATH; Probable transcription factor At3g04930 | ||||
TrEMBL | A0A078GZL9 | 0.0 | A0A078GZL9_BRANA; BnaC01g39850D protein | ||||
TrEMBL | A0A0D3AFK6 | 0.0 | A0A0D3AFK6_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g151840.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3098 | 27 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 1e-130 | DNA-binding storekeeper protein-related transcriptional regulator |