PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584449.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 339aa    MW: 38360.3 Da    PI: 7.3362
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584449.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.33e-3777136261
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                     ++k+l+cprC+s++tkfCyynny++sqPr+fC++C+ryWt GG++r vPvG+grrknk +
  XP_013584449.1  77 PDKILPCPRCNSSDTKFCYYNNYNVSQPRHFCRSCQRYWTSGGSMRTVPVGSGRRKNKGW 136
                     7899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-3073134IPR003851Zinc finger, Dof-type
PfamPF027013.0E-3179134IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.35181135IPR003851Zinc finger, Dof-type
PROSITE patternPS01361083119IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MSELRDTPVK LFGWTITSSL SSLMSNQSAT DDIEQDSTSL QRSSDLTEES KETSENSEIT  60
TTTTTSEEKT TDDLKKPDKI LPCPRCNSSD TKFCYYNNYN VSQPRHFCRS CQRYWTSGGS  120
MRTVPVGSGR RKNKGWVSSD NYMHIKSEDT NSYNSSPAKI LSFDSSGEES LVTENDKNQS  180
SDSVSKKFNK FQRFLPPQVT SSVSPPWPYQ YPPNPAFYQI PVYWGCTVPF WSTLQTSTCL  240
GKRTRDEASH VSVGENEDTS VRARLVSQSR SNTDEANVAT KNRVFYPLPM EREKTHQFSL  300
FVNGSETKSG NNRFVPETYL NLQANPAAMS RSMNFRESM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013584449.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065355e-88AC006535.7 Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome I, complete sequence.
GenBankCP0026845e-88CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584449.10.0PREDICTED: dof zinc finger protein DOF1.3
SwissprotQ9LQX41e-162DOF13_ARATH; Dof zinc finger protein DOF1.3
TrEMBLA0A3P6EGL30.0A0A3P6EGL3_BRAOL; Uncharacterized protein
STRINGBo5g045130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140821624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26790.11e-135Dof family protein