PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584443.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 385aa    MW: 42673.7 Da    PI: 8.8004
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584443.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.37.5e-1719109273
        trihelix   2 WtkqevlaLiearr................emeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 
                     Wt +e+++Liea++                e        +            ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e+
  XP_013584443.1  19 WTLNETMVLIEAKKmdderrmrrfiglpaaE--------QshdsrsssgnkPAELRWKWIEDFCWRKGCMRSQNQCNDKWDNLMRDYKKVREYER 105
                     **************54444444444444441........0344444444448899**************************************** PP

        trihelix  70 krts 73 
                     +r +
  XP_013584443.1 106 RRVE 109
                     9843 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.5511194IPR017877Myb-like domain
PfamPF138373.7E-1218109No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MADKSGGLAM MREYRKGNWT LNETMVLIEA KKMDDERRMR RFIGLPAAEQ SHDSRSSSGN  60
KPAELRWKWI EDFCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERRRVES SFATESSSSA  120
AAETGTYWTM EKSERKERNL PSNMSPQTYQ ALFDVVESKT HPSSTAATNV TAAVAAAAAS  180
GNGSGGGLQI QKMIQQQQEQ GLGFVQKHQM NQPHVLLPLQ PPPPPPLPPS QALQPRPLLL  240
SPPPPPSFHA QPILPTDTSS DSDTSEHPDT SPAKRRKTIP TTTAGPSGAG RGNAETEEGE  300
TVVAAAFSRS ASVIANAIRE SEERQDRRHK EVMSLEERRL MIEESNVQIN REGMNGLVEA  360
INKLASSIFA LASSRHNNQH QGGPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013584443.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894440.0AC189444.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070J23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584443.10.0PREDICTED: uncharacterized protein LOC106293323 isoform X2
TrEMBLA0A0D3CF570.0A0A0D3CF57_BRAOL; Uncharacterized protein
STRINGBo5g065920.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.14e-66Trihelix family protein