PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013584442.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 386aa MW: 42801.9 Da PI: 9.1022

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013584442.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.3	7.5e-17	19	109	2	73
trihelix 2 WtkqevlaLiearr................emeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 Wt +e+++Liea++ e + ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e+ XP_013584442.1 19 WTLNETMVLIEAKKmdderrmrrfiglpaaE--------QshdsrsssgnkPAELRWKWIEDFCWRKGCMRSQNQCNDKWDNLMRDYKKVREYER 105 ************54444444444444441........0344444444448899************************************** PP trihelix 70 krts 73 +r + XP_013584442.1 106 RRVE 109 9843 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.551	11	94	IPR017877	Myb-like domain
Pfam	PF13837	3.7E-12	18	109	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MADKSGGLAM MREYRKGNWT LNETMVLIEA KKMDDERRMR RFIGLPAAEQ SHDSRSSSGN 60 KPAELRWKWI EDFCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERRRVES SFATESSSSA 120 AAETGTYWTM EKSERKERNL PSNMSPQTYQ ALFDVVESKT HPSSTAATNV TAAVAAAAAS 180 GNGSGGGLQI QKMIQQQQEQ GLGFVQKHQM NQPHVLLPLQ PPPPPPLPPS QALQPRPLLL 240 SPPPPPSFHA QPILPTKDTS SDSDTSEHPD TSPAKRRKTI PTTTAGPSGA GRGNAETEEG 300 ETVVAAAFSR SASVIANAIR ESEERQDRRH KEVMSLEERR LMIEESNVQI NREGMNGLVE 360 AINKLASSIF ALASSRHNNQ HQGGPS

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MADKSGGLAM MREYRKGNWT LNETMVLIEA KKMDDERRMR RFIGLPAAEQ SHDSRSSSGN  60
KPAELRWKWI EDFCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERRRVES SFATESSSSA  120
AAETGTYWTM EKSERKERNL PSNMSPQTYQ ALFDVVESKT HPSSTAATNV TAAVAAAAAS  180
GNGSGGGLQI QKMIQQQQEQ GLGFVQKHQM NQPHVLLPLQ PPPPPPLPPS QALQPRPLLL  240
SPPPPPSFHA QPILPTKDTS SDSDTSEHPD TSPAKRRKTI PTTTAGPSGA GRGNAETEEG  300
ETVVAAAFSR SASVIANAIR ESEERQDRRH KEVMSLEERR LMIEESNVQI NREGMNGLVE  360
AINKLASSIF ALASSRHNNQ HQGGPS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013584442.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189444	0.0	AC189444.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070J23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013584442.1	0.0	PREDICTED: uncharacterized protein LOC106293323 isoform X1
TrEMBL	A0A0D3CF57	0.0	A0A0D3CF57_BRAOL; Uncharacterized protein
STRING	Bo5g065920.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31310.1	4e-66	Trihelix family protein