PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584438.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 297aa    MW: 34028.6 Da    PI: 9.5848
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584438.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.41.1e-126742596
                    TT......---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3 25 eh......ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                    +h      +g+   +  ++l++  s  +Wevk+  ++++    lt+GW+eF  +++L++gD+v+F++dg+  f  +v+ 
  XP_013584438.1  6 KHikgttnEGN--ANAVVKLRSdASDLTWEVKM--DGRR----LTQGWQEFTTSHDLRVGDIVIFRHDGDLLF--HVTT 74
                    55554443444..3345777765888*******..9998....***********************8875444..6665 PP
2B364.91.3e-20119211498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     + +++ +l+++ l lp+ f +++g+ ++e+ ++ l +e g+ W+  l+y kk g ++l++GW++F+++n+ +++D ++Fkl++ +++++v+++++
  XP_013584438.1 119 ARVTPANLRKNTLFLPRGFSRSNGLMNREG-EIFLLNEYGKPWTALLSYYKKTGDVYLRRGWRNFCHENQKRANDLLTFKLVQ-EGTKPVLQLCS 211
                     56788999999************8887665.9*************************************************98.89999**9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.984178IPR003340B3 DNA binding domain
SMARTSM010191.5E-5378IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-141585IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-161786IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-71967IPR003340B3 DNA binding domain
CDDcd100177.79E-92075No hitNo description
Gene3DG3DSA:2.40.330.102.0E-20110212IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-22112214IPR015300DNA-binding pseudobarrel domain
CDDcd100179.34E-21116211No hitNo description
PROSITE profilePS5086314.043116212IPR003340B3 DNA binding domain
SMARTSM010193.6E-25117213IPR003340B3 DNA binding domain
PfamPF023629.2E-20118211IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-10216290IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-9223290IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.542226297IPR003340B3 DNA binding domain
SMARTSM010190.55226297IPR003340B3 DNA binding domain
CDDcd100173.47E-8226290No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MTFYSKHIKG TTNEGNANAV VKLRSDASDL TWEVKMDGRR LTQGWQEFTT SHDLRVGDIV  60
IFRHDGDLLF HVTTFGPSCC EIQYDDDVFQ ISSDSDSDSE MNQETREAVS PSDKSCFVAR  120
VTPANLRKNT LFLPRGFSRS NGLMNREGEI FLLNEYGKPW TALLSYYKKT GDVYLRRGWR  180
NFCHENQKRA NDLLTFKLVQ EGTKPVLQLC SSMYNRGSSS TSEDRFLTLT LTHYNFKKCK  240
LCLPATFLKA NGIKSARKIT LVDRYGIKRT TSLKPDNNYG RMRVGKGWRE SSVKLME
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013584438.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584438.10.0PREDICTED: B3 domain-containing protein REM10-like isoform X1
RefseqXP_013750155.10.0B3 domain-containing protein REM10-like
TrEMBLM4EM721e-169M4EM72_BRARP; Uncharacterized protein
STRINGBra029892.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-70B3 family protein