PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584412.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 240aa    MW: 26486.4 Da    PI: 4.9155
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584412.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.2e-1854104155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr ++ +g+Wv+eIr p++   ++r++lg+f ta++Aa+a++ a+++++g
  XP_013584412.1  54 PVYRGVRMRS-WGKWVSEIRQPRK---KTRIWLGTFATADMAARAHDVAALAIKG 104
                     68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-1254104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-3155113IPR001471AP2/ERF domain
SMARTSM003801.2E-3655118IPR001471AP2/ERF domain
PROSITE profilePS5103222.62955112IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-2155113IPR016177DNA-binding domain
CDDcd000187.81E-3456114No hitNo description
PRINTSPR003672.1E-105667IPR001471AP2/ERF domain
PRINTSPR003672.1E-107894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MTSSNSSSSP TSSSSDQSDV TTTTSTHLSE TSPRNNKRKR SNDSSSSSSK LKHPVYRGVR  60
MRSWGKWVSE IRQPRKKTRI WLGTFATADM AARAHDVAAL AIKGSSAVIN FPELASVLPR  120
PASSSPHDIQ AAAAEAAAMV VNGKLSESAK TEMKEAPPSP ESSYVAAESK EEERLEEIVE  180
LPNIEEGSYD MSVKSHSDLD YSEPLDCWVY PPPVMDLYEE FLEFDFLELW SFPHTELINP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1843112272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00362DAPTransfer from AT3G16280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013584412.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV LIGHT. {ECO:0000269|PubMed:16307362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584412.11e-175PREDICTED: ethylene-responsive transcription factor ERF036
SwissprotQ9LU181e-101ERF36_ARATH; Ethylene-responsive transcription factor ERF036
TrEMBLA0A0D3CJN71e-173A0A0D3CJN7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ENE81e-173A0A3P6ENE8_BRAOL; Uncharacterized protein
STRINGBo5g126280.11e-174(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150411618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16280.16e-65ERF family protein