PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013584280.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

FAR1

Protein Properties

Length: 468aa MW: 54107.6 Da PI: 6.6138

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013584280.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.4	3.7e-21	89	175	2	90
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA++ GF+vrk++ +k+ k+++++ + +vCskeg r+e+k k ++ tr+ tr+gCka++ ++++g++++ ++e +HnH+l+ XP_013584280.1 89 AYCKYASSHGFNVRKQRRTKKnKEDEKVARILYVCSKEGVRKESKFK---RSYTRPITRCGCKAHMACYLQSSGRYKIVSFEPNHNHDLV 175 59***********9887765999999***********9888...999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-18	89	175	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.2E-37	297	391	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MMRSFLNLLS SLFSGDSSLI PRKLIEFLVD EDDVSLSDSE SEEEYEIVNK EDQLATEGVD 60 ALEANNENER RGELCIGMEF SSVETAHKAY CKYASSHGFN VRKQRRTKKN KEDEKVARIL 120 YVCSKEGVRK ESKFKRSYTR PITRCGCKAH MACYLQSSGR YKIVSFEPNH NHDLVRTPMK 180 HLLKGNRAVT VSQKQHADDA EMSGISAKAT VEMMSMEVGG RENLGFLEKD YRNYIYRKRM 240 VAMIKGDAGA VLEYFQKKKE DNSSFFYSMQ LDKDDMITNI FWADDRSIND YNLFGDVICF 300 DTTYKTNEYD RPFAPFVGVN HHKQTVVFGA ALLYDETTES FKWLFETFLG AMSGKPPKTI 360 LTDQSAAMAN AIVKVFPETK HRLCVWHIYH NAAKNLSRVF HGPDQFAMDF GKCVYDHEEE 420 EDWLLAWSDM LNKHKLTENK WLKNLFDVIH ENLTTIWSII LMTLYLLL

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MMRSFLNLLS SLFSGDSSLI PRKLIEFLVD EDDVSLSDSE SEEEYEIVNK EDQLATEGVD  60
ALEANNENER RGELCIGMEF SSVETAHKAY CKYASSHGFN VRKQRRTKKN KEDEKVARIL  120
YVCSKEGVRK ESKFKRSYTR PITRCGCKAH MACYLQSSGR YKIVSFEPNH NHDLVRTPMK  180
HLLKGNRAVT VSQKQHADDA EMSGISAKAT VEMMSMEVGG RENLGFLEKD YRNYIYRKRM  240
VAMIKGDAGA VLEYFQKKKE DNSSFFYSMQ LDKDDMITNI FWADDRSIND YNLFGDVICF  300
DTTYKTNEYD RPFAPFVGVN HHKQTVVFGA ALLYDETTES FKWLFETFLG AMSGKPPKTI  360
LTDQSAAMAN AIVKVFPETK HRLCVWHIYH NAAKNLSRVF HGPDQFAMDF GKCVYDHEEE  420
EDWLLAWSDM LNKHKLTENK WLKNLFDVIH ENLTTIWSII LMTLYLLL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013584280.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC183492	0.0	AC183492.1 Brassica oleracea Contig G, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013584280.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0D3CDX1	0.0	A0A0D3CDX1_BRAOL; Uncharacterized protein
STRING	Bo5g050670.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-89	FAR1-related sequence 5