PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013584191.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 162aa MW: 18896.2 Da PI: 10.4735 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.8 | 9.2e-16 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i+++ r vtf kR++g+lKK +EL +LC+ +++ ii+s XP_013584191.1 11 ISDNATRRVTFRKRKHGLLKKLKELTILCGLRACAIIYSD 50 899999********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.35E-21 | 1 | 84 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.871 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.2E-19 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 8.26E-22 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 7.5E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-14 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.5E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MGRRKVTHQL ISDNATRRVT FRKRKHGLLK KLKELTILCG LRACAIIYSD YEEGPEVWPN 60 RKEVRVLLNR FRALPVEKQT KFMMDQKDLM NRMIQDAKKR LEKEQMHSRA MELGLIASSN 120 DIRDADYSED LVKAADVVEK KIKVIRERIK AVESGATILM IE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RRKVTHQLISDNATRRVTFRKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013584191.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584191.1 | 1e-116 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Refseq | XP_013695358.1 | 1e-116 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0D3CCG6 | 1e-114 | A0A0D3CCG6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3N6RKL9 | 1e-114 | A0A3N6RKL9_BRACR; Uncharacterized protein | ||||
TrEMBL | A0A3P6EU57 | 1e-114 | A0A3P6EU57_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g038690.1 | 1e-115 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22590.2 | 7e-70 | AGAMOUS-like 87 |