PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013584174.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 436aa MW: 49132.9 Da PI: 6.6587 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.4 | 0.00014 | 327 | 360 | 15 | 53 |
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 ++++++ +L++++ + +K + a++L++A+ YI+ XP_013584174.1 327 KLRDKITTLQQIVSPF-----GKTDTASVLQEAITYINF 360 7899999999999998.....8***************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.436 | 312 | 361 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.41E-4 | 326 | 366 | No hit | No description |
SuperFamily | SSF47459 | 4.84E-9 | 326 | 377 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.8E-7 | 327 | 369 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MIREECTPSS SWWEDVHHDD HASSISTSFY HKNSNGNNNN NSTANCEGDN LSISTVNTSN 60 RFDLTAESSS RHSLSAPDHP ASTSDELLRD HVVSSNNHLW SLAYLPGRSL GDQMLDHHHH 120 NNHITSSRNN SSTTSELPFE PVCDNANGWI YDTNQVRYDQ SSEQRLSKLT DLVGKHWSLA 180 PPSNPDMNHN LHHHFDQTSD DISMYRQELE VKNEEDLCYN NGLNGGASLF RDAIESSRSF 240 LDIRLSRPLT DINPSFKPSF KALSLSEFGK KEHQTASLLF SQATVRLGPT NAGKKKRCDE 300 VSDEASKKAK CGRDSTHSPD KDLPKAKLRD KITTLQQIVS PFGKTDTASV LQEAITYINF 360 YQEQVKLLST PYMKNSSIKD PWGGWDREEY NKRGPKHLDL KSRGLCLVPI SCTPVAYHDN 420 SATDYWSPSY RGSLYR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013584174.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584174.1 | 0.0 | PREDICTED: transcription factor bHLH111 isoform X1 | ||||
Refseq | XP_013659422.1 | 0.0 | transcription factor bHLH111 isoform X1 | ||||
Swissprot | Q9FYJ6 | 0.0 | BH111_ARATH; Transcription factor bHLH111 | ||||
TrEMBL | A0A3P6EW97 | 0.0 | A0A3P6EW97_BRAOL; Uncharacterized protein | ||||
STRING | XP_006415377.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8055 | 19 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31050.1 | 0.0 | bHLH family protein |