PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013584119.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 26046.8 Da PI: 6.1192 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.1 | 9e-18 | 43 | 92 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr ++ +g+Wv+eIr p ++++r++lg++ tae Aa+a++ a ++l+g XP_013584119.1 43 KYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDVALLCLKG 92 8*****998.**********9...336************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.076 | 43 | 100 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.7E-11 | 43 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-30 | 43 | 102 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.7E-36 | 43 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-20 | 43 | 102 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.6E-9 | 44 | 55 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.71E-28 | 46 | 100 | No hit | No description |
PRINTS | PR00367 | 5.6E-9 | 66 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 235 aa Download sequence Send to blast |
MVKQEPKIQT SSKKEMSLSS PSRSSSLSSS SPKIKNKKSK INKYKGVRMR SWGSWVSEIR 60 APNQKTRIWL GSYSTAEAAA RAYDVALLCL KGPRANLNFP TSSSYSLSQQ LLDENIILSP 120 KSIQRVAAQA ANSSFDLLSP SSSTSSSSAT SSPSDQEQHH DDNDDDGMQS LIGSFVDNHV 180 SLMDPSSSWY GDEHNGMFSF DDVAPFNYSP QLNSMTNMVD EYYYEDAYIP LWSFS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-13 | 42 | 100 | 13 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed cotyledons, ovules and seeds of immature siliques. {ECO:0000269|PubMed:21069430}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013584119.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC013482 | 1e-101 | AC013482.2 Genomic sequence for Arabidopsis thaliana BAC T26F17 from chromosome I, complete sequence. | |||
GenBank | AK176679 | 1e-101 | AK176679.1 Arabidopsis thaliana mRNA for TINY like protein, complete cds, clone: RAFL25-22-A03. | |||
GenBank | AY085925 | 1e-101 | AY085925.1 Arabidopsis thaliana clone 19721 mRNA, complete sequence. | |||
GenBank | BT024616 | 1e-101 | BT024616.1 Arabidopsis thaliana At1g21910 mRNA, complete cds. | |||
GenBank | CP002684 | 1e-101 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584119.1 | 1e-171 | PREDICTED: ethylene-responsive transcription factor ERF012-like | ||||
Swissprot | Q9SFE4 | 2e-97 | ERF12_ARATH; Ethylene-responsive transcription factor ERF012 | ||||
TrEMBL | A0A3P6ETZ4 | 1e-167 | A0A3P6ETZ4_BRAOL; Uncharacterized protein | ||||
STRING | Bra036022.1-P | 1e-131 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2999 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G21910.1 | 1e-81 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|