PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013584067.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 178aa MW: 19919.4 Da PI: 9.3703 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 42.3 | 1.6e-13 | 74 | 160 | 14 | 99 |
NF-YC 14 tdfknhelPlarikkilkadedv.kmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +d k ++P+ ri++i+++d+ ++i +a l+ ka elfi ++ ++ + + k++ ++ ++++v++ + ++fl d vp++ XP_013584067.1 74 EDAKMIRFPMNRIRRIMRSDNSApQIIMQDAVFLVNKATELFIERFSEEAYGSSVKDKKKFIHYKHLSSVVSNEERYEFLADCVPEK 160 6788999*************9873567889999***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.86E-17 | 79 | 161 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-19 | 80 | 144 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 4.3E-22 | 81 | 159 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 178 aa Download sequence Send to blast |
MVSSKKPKSD GVNKGDGLNA RSSGSKSKKN SSNKAKLKEA AKKDAEVHEI SESSSSEGRR 60 DEPKESNGGV VVSEDAKMIR FPMNRIRRIM RSDNSAPQII MQDAVFLVNK ATELFIERFS 120 EEAYGSSVKD KKKFIHYKHL SSVVSNEERY EFLADCVPEK LKAEVALEEW DRSMTDVG |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013584067.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC797147 | 1e-175 | KC797147.1 Brassica napus transcription factor subunit NF-YC10B (NF-YC10B) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584067.1 | 1e-126 | PREDICTED: chromatin accessibility complex protein 1 isoform X2 | ||||
TrEMBL | A0A0D3C8E7 | 1e-125 | A0A0D3C8E7_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g008650.1 | 1e-126 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07980.1 | 1e-63 | nuclear factor Y, subunit C10 |