PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013584066.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YC | ||||||||
Protein Properties | Length: 188aa MW: 21233.9 Da PI: 9.2838 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 26.9 | 1.1e-08 | 74 | 170 | 14 | 99 |
NF-YC 14 tdfknhelPlarikkilkadedv.kmisaeaPvllskac..........elfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 +d k ++P+ ri++i+++d+ ++i +a l+ ka elfi ++ ++ + + k++ ++ ++++v++ + ++fl d vp XP_013584066.1 74 EDAKMIRFPMNRIRRIMRSDNSApQIIMQDAVFLVNKATvqyqplvywhELFIERFSEEAYGSSVKDKKKFIHYKHLSSVVSNEERYEFLADCVP 168 6788999*************987356788999999**96555555555589999999999**********************************9 PP NF-YC 98 rd 99 ++ XP_013584066.1 169 EK 170 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.3E-12 | 79 | 168 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.5E-14 | 80 | 154 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.6E-19 | 81 | 169 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MVSSKKPKSD GVNKGDGLNA RSSGSKSKKN SSNKAKLKEA AKKDAEVHEI SESSSSEGRR 60 DEPKESNGGV VVSEDAKMIR FPMNRIRRIM RSDNSAPQII MQDAVFLVNK ATVQYQPLVY 120 WHELFIERFS EEAYGSSVKD KKKFIHYKHL SSVVSNEERY EFLADCVPEK LKAEVALEEW 180 DRSMTDVG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013584066.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC797147 | 0.0 | KC797147.1 Brassica napus transcription factor subunit NF-YC10B (NF-YC10B) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584066.1 | 1e-136 | PREDICTED: chromatin accessibility complex protein 1 isoform X1 | ||||
TrEMBL | A0A078E130 | 1e-100 | A0A078E130_BRANA; Transcription factor subunit NF-YC10B | ||||
STRING | Bo5g008650.1 | 8e-98 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11190 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 2e-60 | nuclear factor Y, subunit C10 |