PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013584047.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ERF

Protein Properties

Length: 243aa MW: 27212.7 Da PI: 5.2335

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013584047.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63	6.5e-20	83	132	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W++eIrdp++ +r++lg+f taeeAa a++ a+k+++g XP_013584047.1 83 VYRGIRRRP-WGKWASEIRDPRK---GTRVWLGTFNTAEEAAMAYDVAAKRIRG 132 69*****.******954...4**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	6.6E-33	83	141	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.197	83	140	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.73E-23	83	141	IPR016177	DNA-binding domain
Pfam	PF00847	7.8E-14	83	132	IPR001471	AP2/ERF domain
SMART	SM00380	5.6E-37	83	146	IPR001471	AP2/ERF domain
CDD	cd00018	1.47E-33	84	142	No hit	No description
PRINTS	PR00367	7.9E-12	84	95	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.9E-12	106	122	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MCGGAIISDF VPILTKAKGR KLTAEELWSE LDASAGDYLW SFHPTSKLQP TNQQVALKDE 60 AVVKEKEREP ATTEKRGRKR KNVYRGIRRR PWGKWASEIR DPRKGTRVWL GTFNTAEEAA 120 MAYDVAAKRI RGDKAKLNFP DLIPPPLTSP PVSDDQPPAK KLCVLSQSEL TQPSFPVECI 180 GFGNGDQFQN RSYGFELDYD LKQQISSLES FLELDGGTTG EQPSQLDESV DVWMIDDVIS 240 SYA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	2e-22	84	140	3	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	90	KRGRKRKNVYRGIRRRP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bol.3189	4e-81	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in stems and leaves, and, to a lower extent, in roots, siliques and flowers. {ECO:0000269\|PubMed:18836139, ECO:0000269\|PubMed:9192694}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:9159183}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013584047.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269\|PubMed:18836139, ECO:0000269\|PubMed:9159183}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013584047.1	1e-180	PREDICTED: ethylene-responsive transcription factor RAP2-3 isoform X2
Refseq	XP_013693827.1	1e-180	ethylene-responsive transcription factor RAP2-3 isoform X2
Swissprot	P42736	1e-128	RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBL	A0A0D3CJH8	1e-179	A0A0D3CJH8_BRAOL; Uncharacterized protein
STRING	Bo5g123710.1	1e-179	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16770.1	1e-116	ethylene-responsive element binding protein

Publications ? help Back to Top
Bueso E, et al. The lithium tolerance of the Arabidopsis cat2 mutant reveals a cross-talk between oxidative stress and ethylene. Plant J., 2007. 52(6): p. 1052-65 [PMID:17931347] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen YC, et al. Root defense analysis against Fusarium oxysporum reveals new regulators to confer resistance. Sci Rep, 2014. 4: p. 5584 [PMID:24998294] Deslauriers SD,Alvarez AA,Lacey RF,Binder BM,Larsen PB Dominant gain-of-function mutations in transmembrane domain III of ERS1 and ETR1 suggest a novel role for this domain in regulating the magnitude of ethylene response in Arabidopsis. New Phytol., 2015. 208(2): p. 442-55 [PMID:25988998] Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana. Plant Sci., 2015. 236: p. 37-43 [PMID:26025519] Gasch P, et al. Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis. Plant Cell, 2016. 28(1): p. 160-80 [PMID:26668304] Liu W, et al. Ethylene response factor AtERF72 negatively regulates Arabidopsis thaliana response to iron deficiency. Biochem. Biophys. Res. Commun., 2017. 491(3): p. 862-868 [PMID:28390898] Yao Y,Chen X,Wu AM ERF-VII members exhibit synergistic and separate roles in Arabidopsis. Plant Signal Behav, 2017. 12(6): p. e1329073 [PMID:28537474]