PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013583896.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | FAR1 | ||||||||
Protein Properties | Length: 214aa MW: 24499.1 Da PI: 10.1043 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 94.8 | 1e-29 | 43 | 131 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YAk++GF +r+++ ++s r+g++++r++vC+keg+r+++ ++ +++r++ra tr gCka ++vkk+k+gkw vtk+++eHnH+l XP_013583896.1 43 SFYDSYAKSTGFVMRVDAFRRSMRDGTVVWRKLVCNKEGFRRSRPRR-SESRKPRAITREGCKALIVVKKDKSGKWIVTKFVKEHNHPLL 131 5********************************************99.9***************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.6E-28 | 43 | 131 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MEGNLLRGKD VVETMENIVT EEASSVVEPF IGMEFESEEA AKSFYDSYAK STGFVMRVDA 60 FRRSMRDGTV VWRKLVCNKE GFRRSRPRRS ESRKPRAITR EGCKALIVVK KDKSGKWIVT 120 KFVKEHNHPL LSLLANARRS SHISQSPDEK DAKIRELSTE LSRERKRCAA LQQQLDMVLN 180 VMEEHANHLS VNINNVIQSV KEIESITFTK SLIS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013583896.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013583896.1 | 1e-157 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_013696015.1 | 1e-157 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Swissprot | Q9SZL8 | 3e-29 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A3P6FXQ4 | 1e-154 | A0A3P6FXQ4_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g141470.1 | 1e-145 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13524 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 1e-104 | FAR1 family protein |
Publications ? help Back to Top | |||
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