PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013583855.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 284aa MW: 31067.6 Da PI: 7.0218 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.8 | 1.5e-30 | 87 | 140 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl XP_013583855.1 87 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 140 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.6E-20 | 84 | 144 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.059 | 84 | 143 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-30 | 86 | 145 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-24 | 88 | 140 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-7 | 90 | 139 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MREDDSDWFS RWEQDLPSPD ELIPLSQSLI SPDLALAFDI RSPGQQPLHH HQSAPPTPSQ 60 ANSSAEFAAD SSDLGGAGDE PARTLKRPRL VWTPQLHKRF VDAVAHLGIK NAVPKTIMQL 120 MSVDGLTREN VASHLQKYRL YLKRMQGGLS SGGGGGSDPA TDRLFASSPV PAHFLHPNRS 180 DHFMPSFVPI ATLQQQQQMV AAANSHLQPP QFHQRSQIAA GHFGSPTANG KFDASFLARQ 240 TQTQQRMSTT PTLHSPVSNY VEDLESANAN GGRTVLTLFP TRDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 1e-32 | 87 | 143 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269|PubMed:20331973}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013583855.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 2e-53 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013583855.1 | 0.0 | PREDICTED: transcription factor PCL1-like | ||||
Swissprot | O22210 | 3e-66 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A0D3CLC9 | 0.0 | A0A0D3CLC9_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g137150.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1549 | 27 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 1e-126 | G2-like family protein |
Publications ? help Back to Top | |||
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