PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013583548.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 420aa    MW: 48125.2 Da    PI: 6.9101
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013583548.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.82.5e-22109210186
        trihelix   1 rWtkqevlaLiearremeerlr...rgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 
                     +Wt+ +v++Li a+ +++++ +                   +kk++W++vs++m e+gf++sp+qC++k+++lnkryk+++++ +++ +++++++
  XP_013583548.1 109 KWTDTMVRLLIMAVFYIGDEAGglgG-DqtdgkkkisggilQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGRGtACRVVEN 202
                     7**************88888773331.13456678888999**********************************************45999999 PP

        trihelix  79 cpyfdqle 86 
                       +++ ++
  XP_013583548.1 203 QGLLEGMD 210
                     98888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-20107236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MESNVMFSGF SPTTLSLETP QNPPNPVQFQ HPHPHPYTAA NDQQTHQQQQ QPMKQLYPYA  60
AKTKQLSPIS VGGGGEEDDR GSGSGSGCHP EDSAGTDGKR KISPWHRMKW TDTMVRLLIM  120
AVFYIGDEAG GLGGDQTDGK KKISGGILQK KGKWKSVSRA MVEKGFSVSP QQCEDKFNDL  180
NKRYKRVNDI LGRGTACRVV ENQGLLEGMD HLTPKLRDEV KKLLNSKHLF FKEMCAYHNS  240
CGHLDQNQIP VQSKPDHKGC FQMAMIVERE EEEGESDMAE DSETEIEDTD EEEEEEEETS  300
KKRRVSAAVK RMREETARVL DDPGKSAWEK KEWMRRKALE IEERKVGYEW EAVEMEKQRV  360
KWIRYRSKKE REMEKAKLEN QRRSLETERM VLVLRRREIE LTELQLAGKR VDPSSATGVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013583548.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013583548.10.0PREDICTED: uncharacterized protein LOC106292493
TrEMBLA0A0D3CLJ30.0A0A0D3CLJ3_BRAOL; Uncharacterized protein
STRINGBo5g137790.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.10.0sequence-specific DNA binding transcription factors