PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013583546.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 537aa    MW: 58462.2 Da    PI: 7.1999
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013583546.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.16.3e-20155241186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +L++a++++ ++l+rg+l++ +We+v++ +  r +++ +s +qCk+k++nl+kryk ++++++++  +s s++p+f+++e
  XP_013583546.1 155 EWSDAAITCLLDAYSDKFTQLNRGNLRGRDWEDVAATVseRCEKLIKSVEQCKNKIDNLKKRYKLERHRMSSG-GTSASHWPWFKKME 241
                     5*************************************77788999**************************9.666779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-21153243No hitNo description
Gene3DG3DSA:3.40.1160.101.9E-63288529IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.96E-51296529IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042548.81E-116298530No hitNo description
PfamPF006966.0E-21299509IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MASCDDDFSL LGEDQSNPNQ HHHHHHNQVL HHAPYAPRRF APKLSNQQIH VPHHQSNGDE  60
DDEHHDVVAS SAFHGVNPFS ADENSNPYDN NNAAVEGGDE DLGANRSRIG GGVRLEKRQS  120
QEELSDGGTT NGGGSFKRPR TSSSSAGEYR KDREEWSDAA ITCLLDAYSD KFTQLNRGNL  180
RGRDWEDVAA TVSERCEKLI KSVEQCKNKI DNLKKRYKLE RHRMSSGGTS ASHWPWFKKM  240
EEIVGNSMTT KGASDEDRSG SSLGNAAKPA RRYPLVTYNP GVQINNVKSK ATSNPRWRRV  300
VLKISGAALA CTGPNNIDPK IVGLIAREVA MACRLGVEVA IVVGSRNLFC GGTWITATGL  360
DRTTAYHISM MASVMNSVLL QSSLEKMGVQ ARLQTGIAVQ GVGEPYNRQR ATRHLDKGRV  420
VIFGGIGATL GNPLLSSDAA AALRAIDINA EAMVKGTNVE GVYDCHSQDS NATFEHITFH  480
DLASRGLTTM DTMALNFCEE NSIPVVVFNF LEAGNITKAL CGEQVGTLID RTGRGVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A6e-552895291239Uridylate kinase
3ek5_B6e-552895291239Uridylate kinase
3ek5_C6e-552895291239Uridylate kinase
3ek5_D6e-552895291239Uridylate kinase
3ek5_E6e-552895291239Uridylate kinase
3ek5_F6e-552895291239Uridylate kinase
3ek6_A6e-552895291239Uridylate kinase
3ek6_B6e-552895291239Uridylate kinase
3ek6_C6e-552895291239Uridylate kinase
3ek6_D6e-552895291239Uridylate kinase
3ek6_E6e-552895291239Uridylate kinase
3ek6_F6e-552895291239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013583546.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013583546.10.0PREDICTED: uncharacterized protein LOC106292491
TrEMBLA0A0D3CLJ40.0A0A0D3CLJ4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FGQ40.0A0A3P6FGQ4_BRAOL; Uncharacterized protein
STRINGBo5g137800.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein