PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013583413.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 349aa MW: 39835.4 Da PI: 10.0446 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.8 | 7.9e-13 | 30 | 81 | 31 | 87 |
.--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 31 eesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ++ l+l++ s ++Wevk+ ++++ lt+GW++F++ +g+++gD+v+F++dg+ XP_013583413.1 30 SHDFLLKLTSdASDKTWEVKM--DGRR----LTRGWQNFANGHGVRVGDIVIFRRDGD 81 45567777775889*******..9998....***********************6653 PP | |||||||
2 | B3 | 54.5 | 2.1e-17 | 131 | 225 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + +++++l++++l +p++f +++g+ +e +++l +e g+ W++ l+ + ++g++++++GW++F+++n+ +++ ++Fkl++ ++++v+++ XP_013583413.1 131 VARVTASNLSRDMLFFPRDFSRSNGLMDRE-CEIILLNEYGKPWKLFLRNhKTHGGGVYIRTGWRRFCRQNRKRVNSLLTFKLVQ-AGTKPVLQL 223 5668999*****************777544.59***************663555555**************************98.788899999 PP E- CS B3 97 fr 98 ++ XP_013583413.1 224 CS 225 97 PP | |||||||
3 | B3 | 52.9 | 6.6e-17 | 249 | 336 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f++ +++ ++l+++ l+lp kf+ +g+++++ ++tl d+ g + + l+ ++k g++ ++kGW+eF+kang+k+g++++++l++++e XP_013583413.1 249 FLTLTLTTYSLRKSKLCLPGKFVWLNGIENAR--KITLVDRYGVKRTTSLRPDNKYGAMRMGKGWREFCKANGVKAGESFTLELIKEEEI 336 66777899999************999988555..8********999999999********************************987554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.53E-17 | 8 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.68E-12 | 12 | 89 | No hit | No description |
SMART | SM01019 | 9.6E-11 | 14 | 92 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.2E-8 | 33 | 81 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.4E-16 | 35 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.997 | 35 | 92 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.7E-18 | 123 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.37E-19 | 124 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 5.4E-23 | 129 | 227 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.14 | 129 | 226 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.83E-17 | 129 | 225 | No hit | No description |
Pfam | PF02362 | 1.8E-16 | 131 | 225 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.4E-18 | 241 | 341 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.83E-18 | 245 | 342 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.1E-15 | 249 | 337 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-19 | 249 | 348 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.111 | 249 | 348 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.06E-14 | 259 | 334 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MTNASASSPI NPHFFKPLLP SFQSHLVKHS HDFLLKLTSD ASDKTWEVKM DGRRLTRGWQ 60 NFANGHGVRV GDIVIFRRDG DLLFHVTSFG PSCCQILYDD DVIQVSSDSD SEKYHQDTRE 120 EGSPSDNACF VARVTASNLS RDMLFFPRDF SRSNGLMDRE CEIILLNEYG KPWKLFLRNH 180 KTHGGGVYIR TGWRRFCRQN RKRVNSLLTF KLVQAGTKPV LQLCSSMYNR DSLRGSSSSS 240 SSSRSQERFL TLTLTTYSLR KSKLCLPGKF VWLNGIENAR KITLVDRYGV KRTTSLRPDN 300 KYGAMRMGKG WREFCKANGV KAGESFTLEL IKEEEINTST HLLKFCTEV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013583413.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013583413.1 | 0.0 | PREDICTED: B3 domain-containing protein REM10-like | ||||
TrEMBL | A0A0D3CLA2 | 0.0 | A0A0D3CLA2_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g136880.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31680.1 | 2e-77 | B3 family protein |