PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013583370.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 308aa    MW: 34841.3 Da    PI: 7.0956
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013583370.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.4e-154991145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     rg+++ +E  l+++++ +lG++ W+ Ia++++ gRt++++k++w+
   XP_013583370.1 49 RGSFSSQEAALIIELHSLLGNR-WAQIAKHLP-GRTDNEVKNFWN 91
                     899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.5871943IPR017877Myb-like domain
SuperFamilySSF466893.64E-202299IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-72446IPR009057Homeodomain-like
PROSITE profilePS5129424.5774498IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-244798IPR009057Homeodomain-like
SMARTSM007178.8E-154896IPR001005SANT/Myb domain
PfamPF002498.6E-144992IPR001005SANT/Myb domain
CDDcd001671.09E-105191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAMDAGALFP NMQVLIHLWF CVCKYLGLQR CGKSCRLRWI NYLRPDLKRG SFSSQEAALI  60
IELHSLLGNR WAQIAKHLPG RTDNEVKNFW NSSIKKKLMS HHHHGHHLHH HFSSMASLLT  120
PYQNGFNANN SDDEGSRFMS NIIITNTYPN FINPSHVSLP SPHVMAPLMF PTSTEGDIKF  180
LTTNQSHQDN KLYNNLDILS STPIINSHHH YDNDSQLPSL PDLPASTICT YQETLQDYDD  240
QGNEVFVTPY NSNDDDPRSI PLVAAKLLCG QVLEDKILSS SPVSQGHGLL IPTKYNLQMP  300
SESNHHPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-24199830108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in anthers early during endothecial development, with maximal expression during pollen mitosis I and bicellular stages. {ECO:0000269|PubMed:17329564}.
UniprotTISSUE SPECIFICITY: Highly expressed in flowers. {ECO:0000269|PubMed:12753590}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013583370.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195881e-166AY519588.1 Arabidopsis thaliana MYB transcription factor (At3g13890) mRNA, complete cds.
GenBankDQ4466611e-166DQ446661.1 Arabidopsis thaliana clone pENTR221-At3g13890 myb family transcription factor (At3g13890) mRNA, complete cds.
GenBankDQ6530831e-166DQ653083.1 Arabidopsis thaliana clone 0000019124_0000013170 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013583370.10.0PREDICTED: transcription factor MYB26-like
RefseqXP_022565059.10.0transcription factor MYB26-like
SwissprotQ9SPG31e-122MYB26_ARATH; Transcription factor MYB26
TrEMBLA0A0D3CKG00.0A0A0D3CKG0_BRAOL; Uncharacterized protein
STRINGBo5g131980.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128031930
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.21e-129myb domain protein 26
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  3. Ghelli R, et al.
    A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 620-637
    [PMID:29514943]