PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013583314.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 301aa MW: 34264 Da PI: 8.4742 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.7 | 2.1e-32 | 218 | 276 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver a+dp++v++tYeg+H h+ XP_013583314.1 218 LDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLHP 276 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-33 | 203 | 277 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-28 | 211 | 277 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.746 | 213 | 278 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-37 | 218 | 277 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-25 | 219 | 276 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901141 | Biological Process | regulation of lignin biosynthetic process | ||||
GO:1904369 | Biological Process | positive regulation of sclerenchyma cell differentiation | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MGTINQGISL YDEPQNIINP NSNHLGFFLS FPNQTLSSSS SPSSSSPSLA SSFLSHHSLN 60 SFLQNNPPSF LTHPQDPINS MANLPETLIS ISSLSPSKQK DAHDGIVNLD HHRLTGGISS 120 QRPYLNQWAG SCQAEYGYSK KNNHGSEIHV YDIDDDVGNG GRINDDEDHQ HNDTLRRDKH 180 NTTPVGVGCT LKMKKLKTRR KVREPRFCFK TLSDVDVLDD GYRWRKYGQK VVKNTQHPRS 240 YYRCTQDKCR VKKRVERLAD DPRMVITTYE GRHLHPPSNH LDDDSLSYSH HSPLSNFFWF 300 F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-25 | 210 | 275 | 9 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 9e-25 | 210 | 275 | 9 | 74 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013583314.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013583314.1 | 0.0 | PREDICTED: probable WRKY transcription factor 13 isoform X2 | ||||
Swissprot | Q9SVB7 | 1e-145 | WRK13_ARATH; Probable WRKY transcription factor 13 | ||||
TrEMBL | A0A0D3A0X7 | 0.0 | A0A0D3A0X7_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FEP6 | 0.0 | A0A3P6FEP6_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g002540.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 1e-111 | WRKY DNA-binding protein 13 |