PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013583309.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 305aa    MW: 34706.5 Da    PI: 8.4644
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013583309.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.2e-32218276159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver a+dp++v++tYeg+H h+
  XP_013583309.1 218 LDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLHP 276
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-33203277IPR003657WRKY domain
SuperFamilySSF1182902.09E-28211277IPR003657WRKY domain
PROSITE profilePS5081129.746213278IPR003657WRKY domain
SMARTSM007743.4E-37218277IPR003657WRKY domain
PfamPF031061.9E-25219276IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGTINQGISL YDEPQNIINP NSNHLGFFLS FPNQTLSSSS SPSSSSPSLA SSFLSHHSLN  60
SFLQNNPPSF LTHPQDPINS MANLPETLIS ISSLSPSKQK DAHDGIVNLD HHRLTGGISS  120
QRPYLNQWAG SCQAEYGYSK KNNHGSEIHV YDIDDDVGNG GRINDDEDHQ HNDTLRRDKH  180
NTTPVGVGCT LKMKKLKTRR KVREPRFCFK TLSDVDVLDD GYRWRKYGQK VVKNTQHPRS  240
YYRCTQDKCR VKKRVERLAD DPRMVITTYE GRHLHPPSNH LDDDSLSYSH HSPLSNFFWY  300
VVLYV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-26209275874Probable WRKY transcription factor 4
2lex_A7e-26209275874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013583309.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013583309.10.0PREDICTED: probable WRKY transcription factor 13 isoform X1
SwissprotQ9SVB71e-145WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A0D3A0X70.0A0A0D3A0X7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FEP60.0A0A3P6FEP6_BRAOL; Uncharacterized protein
STRINGBo1g002540.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61062746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-111WRKY DNA-binding protein 13