PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00158438001
Common NameGSBRNA2T00158438001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 288aa    MW: 32491.9 Da    PI: 4.8462
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00158438001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.2e-35611532103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y+++ed+++++++sws+++nsf+v+d++ f+ ++Lp+ Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++k F +g+k
  GSBRNA2T00158438001  61 FLTKTYDLVEDSRTNDVVSWSQDKNSFIVWDPQAFSMTLLPRSFKHNNFSSFVRQLNTYGFRKVNPDR---------WEFANKGFLRGQK 141
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll+ki r++++
  GSBRNA2T00158438001 142 HLLKKITRRRTN 153
                          ********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.31E-3456150IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.8E-5657150IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.0E-3857150IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.9E-3161150IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-186184IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-1899111IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340100124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-18112124IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDPSYTCIKE EFPTGINDSP SPPSSSTSSY LHSTSMAPND PATLNSPQPI EGLHESGPPP  60
FLTKTYDLVE DSRTNDVVSW SQDKNSFIVW DPQAFSMTLL PRSFKHNNFS SFVRQLNTYG  120
FRKVNPDRWE FANKGFLRGQ KHLLKKITRR RTNNNNQMQP PESSSQQQSL DNQMDSLRRD  180
KQNPDFLQQL MEHKDKSKDM EEAIRKKRQR TIDQGTSDVV NVEDCDVNVG GGSSSRFVDM  240
KQDIYGDMTE FDMSELDGLA MDIEGLGGQF TGEEVLDQLG YLGSSSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-235615221131Heat shock factor protein 1
5d5v_B3e-235615221131Heat shock factor protein 1
5d5v_D3e-235615221131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193206KDKSKDMEEAIRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00158438001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893270.0AC189327.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB037A01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623226.11e-177PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-107HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0D3BCU01e-176A0A0D3BCU0_BRAOL; Uncharacterized protein
STRINGBo3g081420.11e-177(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.15e-99heat shock transcription factor A6B
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]