PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00158237001
Common NameGSBRNA2T00158237001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 558aa    MW: 63769.7 Da    PI: 6.926
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00158237001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.12.4e-21110206198
                          EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                          f kvl+ sd++k+g +vl k++a e+    +    s++++ +d +g +W++k++ r+ ++r+++t+GW+eF+k ++L +gD +vF   + 
  GSBRNA2T00158237001 110 FTKVLSASDTNKKGSFVLNKRHAIEClplLLT--PSQEVIAKDIHGHEWNFKHTLRGMPQRHLFTSGWNEFAKGKDLVVGDCFVFL--RG 195
                          89*************************86444..3559************************************************..34 PP

                          SEE..EEEEE- CS
                   B3  88 sefelvvkvfr 98 
                          +++e +v++++
  GSBRNA2T00158237001 196 ENGESRVGIRK 206
                          78888999987 PP
2Auxin_resp85.11.5e-28233312183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a +a++ k++F v+Y+Pr+  s+F v++ek+ + +++k+svG+Rf m+fe+ d+se+r++Gt+vgv+d+++ +W++S+WrsL+
  GSBRNA2T00158237001 233 ALNAIERKCMFVVFYKPRS--SQFLVNFEKFIDGVNRKLSVGSRFLMKFEGRDFSEIRYYGTIVGVKDFST-HWKDSEWRSLE 312
                          6789**************6..9**********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-31102212IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.59E-25107207IPR015300DNA-binding pseudobarrel domain
CDDcd100177.06E-22109206No hitNo description
PfamPF023622.6E-18110206IPR003340B3 DNA binding domain
PROSITE profilePS5086312.661110208IPR003340B3 DNA binding domain
SMARTSM010192.3E-16110208IPR003340B3 DNA binding domain
PfamPF065074.4E-25233311IPR010525Auxin response factor
PROSITE profilePS5174516.742446528IPR000270PB1 domain
SuperFamilySSF542773.43E-7449521No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MASDQIMHVQ LESLATDGTN NYLYDQLWKL CAGPLFHLPK LVTSMNDELC QLKPIFDIPS  60
KICCNVFSIK LKVETTTDEI YAEISLLPDT SEVEIPTPRH ENNVQNINYF TKVLSASDTN  120
KKGSFVLNKR HAIECLPLLL TPSQEVIAKD IHGHEWNFKH TLRGMPQRHL FTSGWNEFAK  180
GKDLVVGDCF VFLRGENGES RVGIRKSAHH QQHNIPSPVI SKQSMHHGVV ATALNAIERK  240
CMFVVFYKPR SSQFLVNFEK FIDGVNRKLS VGSRFLMKFE GRDFSEIRYY GTIVGVKDFS  300
THWKDSEWRS LEVQWDEAAT IPRPDKVSPW EIEPLTHSSN IPKSVFLKNK RQSEINDFGQ  360
EIGQKSIQSS MSYSFPSMSK PNYNEQMVKA MKETSTTTEA ASYRLFGVDL TFPAKTKDLV  420
QPTHSYKKSK ISKIFEEEKV DQIQTKTHTK VCMEGAAERT MDLTIFDGYN QLIDELERLF  480
DIKDMLHMHN QWKIVFINAD GDMMLLGDDP WPKFCNTAKE IFIYSENDAK RGNADNKFAE  540
GDPRLTTTIL PPDVNNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1022033516355Auxin response factor 1
4ldw_A1e-1022033516355Auxin response factor 1
4ldw_B1e-1022033516355Auxin response factor 1
4ldx_A1e-1022033516355Auxin response factor 1
4ldx_B1e-1022033516355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00158237001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596928.10.0PREDICTED: auxin response factor 20-like
SwissprotQ9C7I90.0ARFT_ARATH; Auxin response factor 20
TrEMBLA0A0D3D8X30.0A0A0D3D8X3_BRAOL; Auxin response factor
STRINGBo7g067390.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7653631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35240.10.0auxin response factor 20
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]