PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00158203001

Common Name

GSBRNA2T00158203001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HB-other

Protein Properties

Length: 1667aa MW: 186900 Da PI: 4.9906

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00158203001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.8	3.9e-18	22	78	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR t+ qle+Le+ ++ ++yps++ r++L+ +l+L++rq ++WF+ rR k++k GSBRNA2T00158203001 22 KSKRKMKTAAQLEVLENTYKAEPYPSEALRADLSVQLNLSDRQLQMWFCHRRLKDRK 78 679****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-17	4	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.48E-15	15	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.601	19	79	IPR001356	Homeobox domain
SMART	SM00389	3.3E-16	21	83	IPR001356	Homeobox domain
CDD	cd00086	9.55E-14	22	80	No hit	No description
Pfam	PF00046	9.7E-16	22	78	IPR001356	Homeobox domain
PROSITE profile	PS50827	16.574	535	594	IPR018501	DDT domain
SMART	SM00571	3.7E-23	535	594	IPR018501	DDT domain
Pfam	PF02791	1.5E-16	536	591	IPR018501	DDT domain
Pfam	PF05066	1.8E-15	717	784	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.1E-6	914	952	IPR028942	WHIM1 domain
Pfam	PF15613	4.1E-11	1074	1146	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1667 aa Download sequence Send to blast
MEDGSEGDKN KTPEGAAATE SKSKRKMKTA AQLEVLENTY KAEPYPSEAL RADLSVQLNL 60 SDRQLQMWFC HRRLKDRKSS TPTKRQRKES TPSSAAESSK QAAAVNAADL VAGNEHNSFP 120 HELDSRRTAR GGGGGGVTVV RRFNEPSPSE VRAIGYVEAQ LGERLREDGP ILGMEFDPLP 180 PGAFGTPIAE MPTHRKAATR PAFETNLYVR SDVKPLKESV RTIREYQFLP EQPSSRTDHS 240 ERASPASHHY GVPLDASVVM RASSVSGGHR DDYKVSPQIP NLNLSAHHVK PGHVLGEYDS 300 PYQKSYVDPA LHGNKDPFVK SEREVGIDDD EDDGDDDDDD VLLQLERKRK SEEARIAREV 360 EAHEKRIRKE LERQDMLRRK REEQVRKEME RQDRERRKEE ERLLRERQRE EERYLKEQMK 420 EMQRREKFLK KETIRAEKMR QKEEMRRVKE IARLKAANER AMARKIAKES MELIEDERLE 480 LMEVAALSLG LPSMIALDFE ALQNLDAYRD KQVTFPPTSV NLKKPFAVKP WNGSDENIAN 540 LLMVWRFLIN FADVLGLWPF TLDEFTQAFH DHDPRLMGEI HIVLLKTIIK DIEGVARTLS 600 VGVGANQNAA ANPGGGHPHV VEGAYAWGFD IRSWRKNLNV FTWPEILRQL ALSAGFGPEL 660 KKQDIKTMSV HDESEANNSE NVIFNLRIGA AAENAFAKMQ EKGLSNLRRS RHRLTPGTVK 720 FAAFHVLSIE GEKGLTILEV AEKIQKSGLR DLTTSRTPEA SVAAALSRDT KLFERVAPST 780 YCVRPSYRKD AGDAETIFAE ARERIRMFKS GVTDVEDVDE AEREEDSESD VGDDPEVDLN 840 LKKEDLGALE EIGKLTGVEP SLENGKLETE PEANPLTPSL PEESTKDEKI DDILPDQQDA 900 VANDGDCFDV SKLGEQWVQG LVEGDYSSLS IEERLSALVA LIGIAIEGNT IRISLEERLE 960 VASALKKQMW SEVQLDKRWK EESLIRANYL SYPTPKIQES PSADVTPISS QDPLSLPQID 1020 VAGPSLQSQE NVAGMENLQY HHQQQQSYTA DRERLRAELK AYVGYKAEEL YVYRSLPLGL 1080 DRRRNRYWRF SASASRNDPG CGRIFVELQD GRWRLIDSEV GFDCLVKSLD VRGVRESHLH 1140 FMLLKMEASF KEAVRRNVET STGLDLDSDT ADILSTFKIE LGDGERCGVL QRFQSFERWM 1200 WDNMLHPGAL SALKYGAKKS TTLFHICRSC GELHFAVDVC CPGCGQVMMS GGLDVNELCF 1260 ADQVARLGED TGFILRGSHL SPLRIRLLKI QLALVEASLP PEGLQTHWTE SLRKTWGLKL 1320 LLSSSPEELH QVLTMLEVAL KRDFLSSNFE TTCELLDLSE EALLRDVKVL PWTPKTTGGV 1380 ALRLFELDSS IAYTPDQNKD PQKDKESEDF VGLETNFLRN VQETDVIEAT PVQVAYAQED 1440 TEPGLGRGRP PRGRGRPRSQ RGKKPSPASG KPPRGAANSN GEPMLRPRAQ PRGGRKKGRR 1500 SSGTRTRPTK GTLGISNEVV GVGGGGGGGG RRGKEVNVNA KTNLHGWVET PDDDGEASSS 1560 GRSFQYDDDV MAPVDDFGES SKLVGRGEFS LHSDDEYEEE EEEEEEEDMD TKMNVDDEDE 1620 DYINEEDSDG GREQASEMIS MEAAASQRRF PFEDPDLTSS SSSDFQ*

Sequence ? help Back to Top

Protein Sequence Length: 1667 aa Download sequence Send to blast

MEDGSEGDKN KTPEGAAATE SKSKRKMKTA AQLEVLENTY KAEPYPSEAL RADLSVQLNL  60
SDRQLQMWFC HRRLKDRKSS TPTKRQRKES TPSSAAESSK QAAAVNAADL VAGNEHNSFP  120
HELDSRRTAR GGGGGGVTVV RRFNEPSPSE VRAIGYVEAQ LGERLREDGP ILGMEFDPLP  180
PGAFGTPIAE MPTHRKAATR PAFETNLYVR SDVKPLKESV RTIREYQFLP EQPSSRTDHS  240
ERASPASHHY GVPLDASVVM RASSVSGGHR DDYKVSPQIP NLNLSAHHVK PGHVLGEYDS  300
PYQKSYVDPA LHGNKDPFVK SEREVGIDDD EDDGDDDDDD VLLQLERKRK SEEARIAREV  360
EAHEKRIRKE LERQDMLRRK REEQVRKEME RQDRERRKEE ERLLRERQRE EERYLKEQMK  420
EMQRREKFLK KETIRAEKMR QKEEMRRVKE IARLKAANER AMARKIAKES MELIEDERLE  480
LMEVAALSLG LPSMIALDFE ALQNLDAYRD KQVTFPPTSV NLKKPFAVKP WNGSDENIAN  540
LLMVWRFLIN FADVLGLWPF TLDEFTQAFH DHDPRLMGEI HIVLLKTIIK DIEGVARTLS  600
VGVGANQNAA ANPGGGHPHV VEGAYAWGFD IRSWRKNLNV FTWPEILRQL ALSAGFGPEL  660
KKQDIKTMSV HDESEANNSE NVIFNLRIGA AAENAFAKMQ EKGLSNLRRS RHRLTPGTVK  720
FAAFHVLSIE GEKGLTILEV AEKIQKSGLR DLTTSRTPEA SVAAALSRDT KLFERVAPST  780
YCVRPSYRKD AGDAETIFAE ARERIRMFKS GVTDVEDVDE AEREEDSESD VGDDPEVDLN  840
LKKEDLGALE EIGKLTGVEP SLENGKLETE PEANPLTPSL PEESTKDEKI DDILPDQQDA  900
VANDGDCFDV SKLGEQWVQG LVEGDYSSLS IEERLSALVA LIGIAIEGNT IRISLEERLE  960
VASALKKQMW SEVQLDKRWK EESLIRANYL SYPTPKIQES PSADVTPISS QDPLSLPQID  1020
VAGPSLQSQE NVAGMENLQY HHQQQQSYTA DRERLRAELK AYVGYKAEEL YVYRSLPLGL  1080
DRRRNRYWRF SASASRNDPG CGRIFVELQD GRWRLIDSEV GFDCLVKSLD VRGVRESHLH  1140
FMLLKMEASF KEAVRRNVET STGLDLDSDT ADILSTFKIE LGDGERCGVL QRFQSFERWM  1200
WDNMLHPGAL SALKYGAKKS TTLFHICRSC GELHFAVDVC CPGCGQVMMS GGLDVNELCF  1260
ADQVARLGED TGFILRGSHL SPLRIRLLKI QLALVEASLP PEGLQTHWTE SLRKTWGLKL  1320
LLSSSPEELH QVLTMLEVAL KRDFLSSNFE TTCELLDLSE EALLRDVKVL PWTPKTTGGV  1380
ALRLFELDSS IAYTPDQNKD PQKDKESEDF VGLETNFLRN VQETDVIEAT PVQVAYAQED  1440
TEPGLGRGRP PRGRGRPRSQ RGKKPSPASG KPPRGAANSN GEPMLRPRAQ PRGGRKKGRR  1500
SSGTRTRPTK GTLGISNEVV GVGGGGGGGG RRGKEVNVNA KTNLHGWVET PDDDGEASSS  1560
GRSFQYDDDV MAPVDDFGES SKLVGRGEFS LHSDDEYEEE EEEEEEEDMD TKMNVDDEDE  1620
DYINEEDSDG GREQASEMIS MEAAASQRRF PFEDPDLTSS SSSDFQ*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00158203001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013597849.1	0.0	PREDICTED: uncharacterized protein LOC106305959
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A0D3D8V3	0.0	A0A0D3D8V3_BRAOL; Uncharacterized protein
STRING	Bo7g067190.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9601	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]