PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00158203001
Common NameGSBRNA2T00158203001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-other
Protein Properties Length: 1667aa    MW: 186900 Da    PI: 4.9906
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00158203001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.9e-182278157
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                         ++kR   t+ qle+Le+ ++ ++yps++ r++L+ +l+L++rq ++WF+ rR k++k
  GSBRNA2T00158203001 22 KSKRKMKTAAQLEVLENTYKAEPYPSEALRADLSVQLNLSDRQLQMWFCHRRLKDRK 78
                         679****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-17478IPR009057Homeodomain-like
SuperFamilySSF466892.48E-151579IPR009057Homeodomain-like
PROSITE profilePS5007116.6011979IPR001356Homeobox domain
SMARTSM003893.3E-162183IPR001356Homeobox domain
CDDcd000869.55E-142280No hitNo description
PfamPF000469.7E-162278IPR001356Homeobox domain
PROSITE profilePS5082716.574535594IPR018501DDT domain
SMARTSM005713.7E-23535594IPR018501DDT domain
PfamPF027911.5E-16536591IPR018501DDT domain
PfamPF050661.8E-15717784IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.1E-6914952IPR028942WHIM1 domain
PfamPF156134.1E-1110741146IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1667 aa     Download sequence    Send to blast
MEDGSEGDKN KTPEGAAATE SKSKRKMKTA AQLEVLENTY KAEPYPSEAL RADLSVQLNL  60
SDRQLQMWFC HRRLKDRKSS TPTKRQRKES TPSSAAESSK QAAAVNAADL VAGNEHNSFP  120
HELDSRRTAR GGGGGGVTVV RRFNEPSPSE VRAIGYVEAQ LGERLREDGP ILGMEFDPLP  180
PGAFGTPIAE MPTHRKAATR PAFETNLYVR SDVKPLKESV RTIREYQFLP EQPSSRTDHS  240
ERASPASHHY GVPLDASVVM RASSVSGGHR DDYKVSPQIP NLNLSAHHVK PGHVLGEYDS  300
PYQKSYVDPA LHGNKDPFVK SEREVGIDDD EDDGDDDDDD VLLQLERKRK SEEARIAREV  360
EAHEKRIRKE LERQDMLRRK REEQVRKEME RQDRERRKEE ERLLRERQRE EERYLKEQMK  420
EMQRREKFLK KETIRAEKMR QKEEMRRVKE IARLKAANER AMARKIAKES MELIEDERLE  480
LMEVAALSLG LPSMIALDFE ALQNLDAYRD KQVTFPPTSV NLKKPFAVKP WNGSDENIAN  540
LLMVWRFLIN FADVLGLWPF TLDEFTQAFH DHDPRLMGEI HIVLLKTIIK DIEGVARTLS  600
VGVGANQNAA ANPGGGHPHV VEGAYAWGFD IRSWRKNLNV FTWPEILRQL ALSAGFGPEL  660
KKQDIKTMSV HDESEANNSE NVIFNLRIGA AAENAFAKMQ EKGLSNLRRS RHRLTPGTVK  720
FAAFHVLSIE GEKGLTILEV AEKIQKSGLR DLTTSRTPEA SVAAALSRDT KLFERVAPST  780
YCVRPSYRKD AGDAETIFAE ARERIRMFKS GVTDVEDVDE AEREEDSESD VGDDPEVDLN  840
LKKEDLGALE EIGKLTGVEP SLENGKLETE PEANPLTPSL PEESTKDEKI DDILPDQQDA  900
VANDGDCFDV SKLGEQWVQG LVEGDYSSLS IEERLSALVA LIGIAIEGNT IRISLEERLE  960
VASALKKQMW SEVQLDKRWK EESLIRANYL SYPTPKIQES PSADVTPISS QDPLSLPQID  1020
VAGPSLQSQE NVAGMENLQY HHQQQQSYTA DRERLRAELK AYVGYKAEEL YVYRSLPLGL  1080
DRRRNRYWRF SASASRNDPG CGRIFVELQD GRWRLIDSEV GFDCLVKSLD VRGVRESHLH  1140
FMLLKMEASF KEAVRRNVET STGLDLDSDT ADILSTFKIE LGDGERCGVL QRFQSFERWM  1200
WDNMLHPGAL SALKYGAKKS TTLFHICRSC GELHFAVDVC CPGCGQVMMS GGLDVNELCF  1260
ADQVARLGED TGFILRGSHL SPLRIRLLKI QLALVEASLP PEGLQTHWTE SLRKTWGLKL  1320
LLSSSPEELH QVLTMLEVAL KRDFLSSNFE TTCELLDLSE EALLRDVKVL PWTPKTTGGV  1380
ALRLFELDSS IAYTPDQNKD PQKDKESEDF VGLETNFLRN VQETDVIEAT PVQVAYAQED  1440
TEPGLGRGRP PRGRGRPRSQ RGKKPSPASG KPPRGAANSN GEPMLRPRAQ PRGGRKKGRR  1500
SSGTRTRPTK GTLGISNEVV GVGGGGGGGG RRGKEVNVNA KTNLHGWVET PDDDGEASSS  1560
GRSFQYDDDV MAPVDDFGES SKLVGRGEFS LHSDDEYEEE EEEEEEEDMD TKMNVDDEDE  1620
DYINEEDSDG GREQASEMIS MEAAASQRRF PFEDPDLTSS SSSDFQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00158203001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597849.10.0PREDICTED: uncharacterized protein LOC106305959
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A0D3D8V30.0A0A0D3D8V3_BRAOL; Uncharacterized protein
STRINGBo7g067190.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96012530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]