PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00158200001 | ||||||||
Common Name | GSBRNA2T00158200001, LOC106439729 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 465aa MW: 50633.6 Da PI: 8.4865 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15 | 7e-05 | 67 | 87 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk F r nL+ H r H GSBRNA2T00158200001 67 CEVCGKGFQRDQNLQLHRRGH 87 *******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.71E-6 | 64 | 87 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.5E-5 | 64 | 87 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.51 | 65 | 87 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.089 | 65 | 87 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 67 | 87 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 240 | 106 | 136 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 7.71E-6 | 136 | 161 | No hit | No description |
SMART | SM00355 | 160 | 141 | 161 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MTGEVLKTVS SGSAAFAPSS STLDHDESLI NPPLVKKKRN LPGNPDPEAE VIALSPKTLM 60 ATNRFLCEVC GKGFQRDQNL QLHRRGHNLP WKLKQRTSKE VRKRVYVCPE KTCVHHDPAR 120 ALGDLTGIKK HFCRKHGEKK WTCEKCAKRY AVHSDYKAHS KTCGTREYRC DCGTIFSRRD 180 SFITHRAFCD ALAEETAKIN AASHLNGLSA AGTVGMNLNY QYLMGTLNPP LQPFEPQPPT 240 NQNHHHHFLP PPPSSSSSLS LWMGQDIAPT SQTQPQDYEW VFANAKAASG CINNNNHNDL 300 ITQTANASST TTATLSVPSL FSSDQTQSLN ANVNMSATAL LQKAAEIGAN STTATTTNPS 360 AFLKSFPQKS SDQTTTGYDG GEKFFALFGT NNNIGVVSNS HDQETENVRN DVTVASAMEE 420 LQNYPWKRRK VDGGGEGGGG GQTRDFLGVG VQTLCHPSSI NGWI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-32 | 137 | 206 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 1e-32 | 137 | 206 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.22463 | 0.0 | microspore-derived embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed throughout development. {ECO:0000269|PubMed:21265895}. | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in vegetative organs and at lower levels in flowers and siliques. Expressed predominantly in roots. In roots, present in cortex, endodermis, and pericycle layer (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000305|PubMed:21265895}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00158200001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013736687.1 | 0.0 | zinc finger protein NUTCRACKER | ||||
Swissprot | Q9FFH3 | 0.0 | IDD8_ARATH; Zinc finger protein NUTCRACKER | ||||
TrEMBL | A0A3N6SHF9 | 0.0 | A0A3N6SHF9_BRACR; Uncharacterized protein | ||||
STRING | Bo7g067160.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3710 | 26 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44160.1 | 0.0 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106439729 |
Publications ? help Back to Top | |||
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