PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00158176001
Common NameGSBRNA2T00158176001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 371aa    MW: 43009.5 Da    PI: 8.3903
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00158176001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.32.5e-22162262198
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f kvl+ sd++k+g +vl k++a e+       ++    s++++ +d +g +W++k++ r++++r+++t+GW++F k ++L++gD++vF 
  GSBRNA2T00158176001 162 FTKVLSASDTSKKGSFVLNKRHAIEClplldtsKLT--PSQEVIAKDMHGHEWKFKHTLRGTPQRHLFTSGWNDFSKRKDLDVGDSFVFL 249
                          89****************************965444..4569************************************************ PP

                          E-SSSEE..EEEEE- CS
                   B3  84 ldgrsefelvvkvfr 98 
                            + +++e +v++++
  GSBRNA2T00158176001 250 --RGENGESRVGIRK 262
                          ..3478888999997 PP
2Auxin_resp81.12.6e-27291368383
           Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          +a++ k++F v+Y+Pr+  s+F v+++k+ + +++k+s+G+Rf m+fe+ d++e+r++Gt+v v+d+++ +W++S+WrsL+
  GSBRNA2T00158176001 291 NAVKRKCMFVVFYKPRS--SQFLVNFDKFIDGVNKKFSIGSRFLMKFEGRDFNEIRYYGTIVRVRDFST-HWKDSEWRSLE 368
                          7899************6..9**********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.6E-34153274IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-28158263IPR015300DNA-binding pseudobarrel domain
CDDcd100172.96E-20161262No hitNo description
SMARTSM010198.6E-19162264IPR003340B3 DNA binding domain
PfamPF023622.0E-19162263IPR003340B3 DNA binding domain
PROSITE profilePS5086312.774162264IPR003340B3 DNA binding domain
PfamPF065073.4E-24291367IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDLSNITCNA CFVRIFGFEF VFQLIKNIIC NYILSTDESN NYMYCQLCKL CAGPLFDPPK  60
VGEEIYYFPQ GHIEHAIFYF QTYYILSLIY MDDELCQLKP NFDIPSKIRC NVFSIKLKLY  120
LLTVNETTTD EIYAEISLLP DISEVEIPTP KPENNIQNIN YFTKVLSASD TSKKGSFVLN  180
KRHAIECLPL LDTSKLTPSQ EVIAKDMHGH EWKFKHTLRG TPQRHLFTSG WNDFSKRKDL  240
DVGDSFVFLR GENGESRVGI RKAAIHQQHN KPSSLISKQS MHHGIVATPL NAVKRKCMFV  300
VFYKPRSSQF LVNFDKFIDG VNKKFSIGSR FLMKFEGRDF NEIRYYGTIV RVRDFSTHWK  360
DSEWRSLEVQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A6e-934637022334Auxin response factor 1
4ldw_A6e-934637022334Auxin response factor 1
4ldw_B6e-934637022334Auxin response factor 1
4ldx_A6e-934637022334Auxin response factor 1
4ldx_B6e-934637022334Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00158176001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596928.10.0PREDICTED: auxin response factor 20-like
SwissprotQ9LQE81e-125ARFN_ARATH; Putative auxin response factor 14
TrEMBLA0A3P5YMU10.0A0A3P5YMU1_BRACM; Auxin response factor (Fragment)
TrEMBLA0A3P6F2Q50.0A0A3P6F2Q5_BRAOL; Auxin response factor (Fragment)
STRINGBo7g067390.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7653631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35540.11e-127auxin response factor 14
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]