PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00157683001
Common NameGSBRNA2T00157683001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 627aa    MW: 71792.3 Da    PI: 7.9954
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00157683001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.21.3e-1782184198
                          EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f kv + sd++++g +vl k++a ++     +++ ++s++++ +d  g +W++k++   +++ +++++t+GW+eF+k ++L + D++vF 
  GSBRNA2T00157683001  82 FTKVSSASDTHTNGGFVLYKRHAIDClplldMSQLTTSQEIIAKDIYGHEWSFKHTLsaTRYTKKHLFTSGWNEFAKRKKLVAVDSFVFL 171
                          899***************************966667899****************8888999999************************* PP

                          E-SSSEE..EEEEE- CS
                   B3  84 ldgrsefelvvkvfr 98 
                          +   +++e +v++ +
  GSBRNA2T00157683001 172 R--GENGESRVGISK 184
                          3..377777898865 PP

2Auxin_resp83.74e-28210289183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a +a+++k++F v+Y+Pr+  s+F v++ek+++ +++k+s+G++f m+fe++d +e+r+ Gt+vgv+d+++ +W++S+Wrs+k
  GSBRNA2T00157683001 210 ALNAIKNKCMFVVLYKPRS--SQFLVNFEKFVDRVNNKFSIGSKFSMKFEGKDLNEIRYNGTIVGVRDFST-HWKDSEWRSIK 289
                          6799**************6..9**********************************************777.********985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-2673198IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.58E-2079189IPR015300DNA-binding pseudobarrel domain
CDDcd100173.08E-1281184No hitNo description
SMARTSM010193.2E-1182186IPR003340B3 DNA binding domain
PfamPF023621.5E-1482183IPR003340B3 DNA binding domain
PROSITE profilePS5086310.54682186IPR003340B3 DNA binding domain
PfamPF065072.7E-25210289IPR010525Auxin response factor
SuperFamilySSF542776.87E-7419494No hitNo description
PROSITE profilePS5174516.488419509IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MAGDQIMHAQ PEVLAIDETN NYLNGILWKL CAGPLFDTPE VGEKVETNTN EIYAEVSLVS  60
DISDVEIPIP KNENNIQNIN YFTKVSSASD THTNGGFVLY KRHAIDCLPL LDMSQLTTSQ  120
EIIAKDIYGH EWSFKHTLSA TRYTKKHLFT SGWNEFAKRK KLVAVDSFVF LRGENGESRV  180
GISKAAHHQR NIPTSLISKQ SMHHSVVATA LNAIKNKCMF VVLYKPRSSQ FLVNFEKFVD  240
RVNNKFSIGS KFSMKFEGKD LNEIRYNGTI VGVRDFSTHW KDSEWRSIKV QWDEGATIPR  300
LDKVSPWEIE LLTHSSKIFK SDDLKHKRQI EVHEFGQEFR QSSIQSSMRF SFPTIYSEQM  360
IQAMKETSTT TATTSCRPFG VDLMVPAITK DPVEPIDSYK KFKISKIFEN ERVDHVEAKS  420
RTKVHMEGVI ERTVDLTIFD GYNQLIDELE RLFDIKGELH MHNQWKMFFI YDDGDMMILG  480
DHPWPKFCNM AKEIFICSKE DVKIEIANNR FFEVIFRFSF LFSMAFKASI PSMDRLKGWG  540
LNVPSDCLIC ASHQKNRQHI FLVAHIPLRF DISSRPNSIS AVIQASKVHQ HIQIVLQGAR  600
NRLSRSAVFV MNTTELINCS LAVCTP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A5e-802731723360Auxin response factor 1
4ldy_B5e-802731723360Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00157683001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794860.0JN979486.1 Brassica rapa subsp. pekinensis auxin response factor 25 (ARF25) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113394.10.0PREDICTED: putative auxin response factor 14
SwissprotQ9LQE81e-159ARFN_ARATH; Putative auxin response factor 14
TrEMBLA0A3P6EET00.0A0A3P6EET0_BRAOL; Auxin response factor (Fragment)
STRINGBra027944.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7653631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35540.11e-158auxin response factor 14
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]