PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00157683001 | ||||||||
Common Name | GSBRNA2T00157683001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 627aa MW: 71792.3 Da PI: 7.9954 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.2 | 1.3e-17 | 82 | 184 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 f kv + sd++++g +vl k++a ++ +++ ++s++++ +d g +W++k++ +++ +++++t+GW+eF+k ++L + D++vF GSBRNA2T00157683001 82 FTKVSSASDTHTNGGFVLYKRHAIDClplldMSQLTTSQEIIAKDIYGHEWSFKHTLsaTRYTKKHLFTSGWNEFAKRKKLVAVDSFVFL 171 899***************************966667899****************8888999999************************* PP E-SSSEE..EEEEE- CS B3 84 ldgrsefelvvkvfr 98 + +++e +v++ + GSBRNA2T00157683001 172 R--GENGESRVGISK 184 3..377777898865 PP | |||||||
2 | Auxin_resp | 83.7 | 4e-28 | 210 | 289 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a +a+++k++F v+Y+Pr+ s+F v++ek+++ +++k+s+G++f m+fe++d +e+r+ Gt+vgv+d+++ +W++S+Wrs+k GSBRNA2T00157683001 210 ALNAIKNKCMFVVLYKPRS--SQFLVNFEKFVDRVNNKFSIGSKFSMKFEGKDLNEIRYNGTIVGVRDFST-HWKDSEWRSIK 289 6799**************6..9**********************************************777.********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.5E-26 | 73 | 198 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.58E-20 | 79 | 189 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.08E-12 | 81 | 184 | No hit | No description |
SMART | SM01019 | 3.2E-11 | 82 | 186 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-14 | 82 | 183 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.546 | 82 | 186 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.7E-25 | 210 | 289 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 6.87E-7 | 419 | 494 | No hit | No description |
PROSITE profile | PS51745 | 16.488 | 419 | 509 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 627 aa Download sequence Send to blast |
MAGDQIMHAQ PEVLAIDETN NYLNGILWKL CAGPLFDTPE VGEKVETNTN EIYAEVSLVS 60 DISDVEIPIP KNENNIQNIN YFTKVSSASD THTNGGFVLY KRHAIDCLPL LDMSQLTTSQ 120 EIIAKDIYGH EWSFKHTLSA TRYTKKHLFT SGWNEFAKRK KLVAVDSFVF LRGENGESRV 180 GISKAAHHQR NIPTSLISKQ SMHHSVVATA LNAIKNKCMF VVLYKPRSSQ FLVNFEKFVD 240 RVNNKFSIGS KFSMKFEGKD LNEIRYNGTI VGVRDFSTHW KDSEWRSIKV QWDEGATIPR 300 LDKVSPWEIE LLTHSSKIFK SDDLKHKRQI EVHEFGQEFR QSSIQSSMRF SFPTIYSEQM 360 IQAMKETSTT TATTSCRPFG VDLMVPAITK DPVEPIDSYK KFKISKIFEN ERVDHVEAKS 420 RTKVHMEGVI ERTVDLTIFD GYNQLIDELE RLFDIKGELH MHNQWKMFFI YDDGDMMILG 480 DHPWPKFCNM AKEIFICSKE DVKIEIANNR FFEVIFRFSF LFSMAFKASI PSMDRLKGWG 540 LNVPSDCLIC ASHQKNRQHI FLVAHIPLRF DISSRPNSIS AVIQASKVHQ HIQIVLQGAR 600 NRLSRSAVFV MNTTELINCS LAVCTP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 5e-80 | 27 | 317 | 23 | 360 | Auxin response factor 1 |
4ldy_B | 5e-80 | 27 | 317 | 23 | 360 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00157683001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979486 | 0.0 | JN979486.1 Brassica rapa subsp. pekinensis auxin response factor 25 (ARF25) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009113394.1 | 0.0 | PREDICTED: putative auxin response factor 14 | ||||
Swissprot | Q9LQE8 | 1e-159 | ARFN_ARATH; Putative auxin response factor 14 | ||||
TrEMBL | A0A3P6EET0 | 0.0 | A0A3P6EET0_BRAOL; Auxin response factor (Fragment) | ||||
STRING | Bra027944.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7653 | 6 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35540.1 | 1e-158 | auxin response factor 14 |
Publications ? help Back to Top | |||
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