PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00157585001 | ||||||||
Common Name | GSBRNA2T00157585001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 29735.3 Da PI: 7.3075 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.7 | 3.1e-14 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l + + +G +W+t++ + g+ R +k+c++rw +yl GSBRNA2T00157585001 16 KGFWSPEEDEKLRRFILSHGHSCWTTVPIKAGLQRNGKSCRLRWINYL 63 688*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.2 | 2.4e-15 | 73 | 114 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++eE+e+++ + lG++ W++Ia++++ gRt++++k++w+++l GSBRNA2T00157585001 73 SAEEEEIILTFHSSLGNK-WSKIAQYLP-GRTDNEIKNYWHSHL 114 89****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.242 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-27 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-10 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-12 | 17 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.33E-8 | 19 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-20 | 19 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.236 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-13 | 68 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.55E-10 | 73 | 114 | No hit | No description |
Pfam | PF00249 | 1.3E-13 | 73 | 114 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MAKTKSGEML KERQRKGFWS PEEDEKLRRF ILSHGHSCWT TVPIKAGLQR NGKSCRLRWI 60 NYLRPGLKRD MISAEEEEII LTFHSSLGNK WSKIAQYLPG RTDNEIKNYW HSHLKKRWLK 120 PPSIERNPQT LVSNHVISFQ GLPDKTSSSP SEESNNNYLC SSGPEIPRLF FSEWFSSSDL 180 TDSNHNHAPS IEGTISDYQE SGDVDRFHYN NMMMNNSNWT LEDIVFGSKC QKQEHNVDRE 240 GLDCNSSDIL FSSSIMM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-23 | 16 | 117 | 7 | 107 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00157585001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519609 | 1e-128 | AY519609.1 Arabidopsis thaliana MYB transcription factor (At4g25560) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013625714.1 | 1e-170 | PREDICTED: transcription factor LAF1-like | ||||
Refseq | XP_013646753.1 | 1e-170 | transcription factor LAF1-like | ||||
Refseq | XP_013646754.1 | 1e-170 | transcription factor LAF1-like | ||||
Swissprot | Q9M0K4 | 1e-136 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | A0A0D3A6C2 | 1e-169 | A0A0D3A6C2_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g040300.1 | 1e-170 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25560.1 | 1e-131 | myb domain protein 18 |
Publications ? help Back to Top | |||
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