PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00156923001
Common NameGSBRNA2T00156923001, LOC106420922
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 350aa    MW: 39941.4 Da    PI: 6.2222
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00156923001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.7e-181461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd++l+++++++G g+W+t ++  g+ R++k+c++rw +yl
  GSBRNA2T00156923001 14 KGPWTSEEDQKLIEYIQKHGYGNWRTLPNNAGLQRCGKSCRLRWTNYL 61
                         79********************************************97 PP
2Myb_DNA-binding51.91.7e-1667111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
  GSBRNA2T00156923001  67 RGRFSFEEEETIIKLHSFLGNK-WSAIAARLP-GRTDNEIKNFWNTH 111
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-26564IPR009057Homeodomain-like
PROSITE profilePS5129424.793965IPR017930Myb domain
SuperFamilySSF466893.52E-3111108IPR009057Homeodomain-like
SMARTSM007174.9E-131363IPR001005SANT/Myb domain
PfamPF002493.4E-161461IPR001005SANT/Myb domain
CDDcd001673.62E-121661No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2665117IPR009057Homeodomain-like
PROSITE profilePS5129419.21466116IPR017930Myb domain
SMARTSM007171.4E-1566114IPR001005SANT/Myb domain
PfamPF002498.2E-1567111IPR001005SANT/Myb domain
CDDcd001671.59E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGRSPCCEKN GLKKGPWTSE EDQKLIEYIQ KHGYGNWRTL PNNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIK LHSFLGNKWS AIAARLPGRT DNEIKNFWNT HIRKKLIRMG  120
IDPVTHSPRL DLLDISTILA SSLYNSSSHE SHHVNMSTLM MDAHRQQQQY PLVNPEILKL  180
ATSLFSQNQT QNYMVDHDSS THENHTGYHN DVNQTGVNQY QTDHQELQSC LPPFPNEAQF  240
NNMDHRFNGF GEHTLVSTSN TLVQDCNIPT FNDYESSSFV LDPSYSDQSF NFTNSVLNTP  300
SSSPTTLNSC STTYINSTSC TTEDEMESYC NNLMKFDIPD FLDICGVII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves and flowers. {ECO:0000269|PubMed:8980549}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00156923001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2410200.0AC241020.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039B11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022561779.10.0transcription factor MYB102-like
SwissprotQ9LDR80.0MY102_ARATH; Transcription factor MYB102
TrEMBLA0A0D3DF940.0A0A0D3DF94_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EVG30.0A0A3P6EVG3_BRAOL; Uncharacterized protein
STRINGBo7g107420.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.10.0MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  5. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]