PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00156903001
Common NameGSBRNA2T00156903001, LOC106421124, LOC106421125
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 207aa    MW: 23384.7 Da    PI: 7.2169
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00156903001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof115.91.6e-362077461
               zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                          a+ cprCds+ntkfCyynnyslsqPry Ck+CrryWt+GG+lrn+P+Gg+ rk k+ 
  GSBRNA2T00156903001 20 PARVCPRCDSDNTKFCYYNNYSLSQPRYSCKNCRRYWTHGGTLRNIPIGGSGRKTKRP 77
                         5789**************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-241676IPR003851Zinc finger, Dof-type
PfamPF027013.9E-322276IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.8762276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDKLNVFVRG DNQVNEEKPP ARVCPRCDSD NTKFCYYNNY SLSQPRYSCK NCRRYWTHGG  60
TLRNIPIGGS GRKTKRPKID QPSAENQQVN NHQPFLHGQE TNEFVGTFNG SSSSDVVVGN  120
HFGFHEIHGA MVNNVPPVRS FPPMEALHIS DVSSRQDYYD VGSNDLIDNP LINRPTEDDL  180
NMWNESYNNT MNVNHNASTS GRRGYL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00156903001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728780.0AC172878.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH069E01, complete sequence.
GenBankAC2410200.0AC241020.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039B11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013717421.11e-154dof zinc finger protein DOF4.4-like
RefseqXP_013717422.11e-154dof zinc finger protein DOF4.4-like
SwissprotQ9SUA92e-71DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A3P6F3F41e-153A0A3P6F3F4_BRAOL; Uncharacterized protein
STRINGBra038789.1-P1e-151(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.17e-70Dof-type zinc finger domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]