PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00156634001 | ||||||||
Common Name | GSBRNA2T00156634001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 488aa MW: 54442.6 Da PI: 4.411 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.2 | 4.1e-36 | 39 | 130 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+y++++d+++++++sws+n+nsf+v+d+ +fak++Lpk Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k GSBRNA2T00156634001 39 FLSKTYDMVDDPATDSIVSWSANNNSFIVWDPPQFAKDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLRGQK 119 9****************************************************************999.........************* PP XXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkks 102 +ll++i r+k GSBRNA2T00156634001 120 HLLKTITRRKP 130 ********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.1E-39 | 32 | 123 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.25E-35 | 34 | 128 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.3E-63 | 35 | 128 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.6E-31 | 39 | 128 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.3E-19 | 39 | 62 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.3E-19 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 78 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.3E-19 | 90 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MDRGNSTKGG SVTMESTEIQ PSPQPQPVAV LTGNAPPPFL SKTYDMVDDP ATDSIVSWSA 60 NNNSFIVWDP PQFAKDLLPK NFKHNNFSSF VRQLNTYGFR KVDPDKWEFA NEGFLRGQKH 120 LLKTITRRKP AHGHGPQQSQ HSIGQNSSVS SCVEVGKFGL KEEVERLKRD KNVLMQELVR 180 LRQQQQSTDN QLQTMVQRLQ GMENRQQQLM SFLAKAVQSP HFLSQFLQQQ NQQNEGSRRI 240 SDTSKKRRFK RDGIVSNNKD SASPDGQIVK YQPPMHEQAK AMFSQLMKME PYKAGDDGFL 300 LGNGTSTTTS TEGTEMEISA NNITGISLHE MPIASEIQSS SSPSGATPEN VTVAEFPTPD 360 EAIPSPDDLS LPEFADMLQE NIAEVPPENF LETNMEDLSP ILDSDLFNND DLPFDIDDIL 420 RDPDLEPTVD DYASLFQDIL MSSPVPDDME VTPVDVTTKD GETEQKQMDN LTQQMGLLSP 480 ETIDLSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 9e-27 | 37 | 128 | 18 | 120 | Heat shock factor protein 1 |
5d5u_B | 1e-26 | 37 | 128 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-26 | 37 | 128 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-26 | 37 | 128 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 244 | 249 | KKRRFK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00156634001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189255 | 0.0 | AC189255.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019O20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009114894.1 | 0.0 | PREDICTED: heat stress transcription factor A-1d | ||||
Swissprot | Q9LQM7 | 0.0 | HFA1D_ARATH; Heat stress transcription factor A-1d | ||||
TrEMBL | A0A3P5Y1Q4 | 0.0 | A0A3P5Y1Q4_BRACM; Uncharacterized protein | ||||
STRING | Bra023258.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6470 | 24 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32330.1 | 0.0 | heat shock transcription factor A1D |
Publications ? help Back to Top | |||
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