PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00156597001
Common NameGSBRNA2T00156597001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 365aa    MW: 42336.3 Da    PI: 6.3469
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00156597001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.12.5e-51161441128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          +ppGfrFhPt+eel+++yL+kkv+++k++l +vi+evd++k+ePwd+++  ++ +  +++wyfFs++dkky+tg+r+nrat sg+Wkatg
  GSBRNA2T00156597001  16 VPPGFRFHPTEEELLHYYLRKKVHSQKIDL-DVIREVDLNKLEPWDIQEecRIGSaPQTDWYFFSHKDKKYPTGTRTNRATVSGFWKATG 104
                          69****************************.9***************953433332556******************************* PP

                  NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +dk ++s   + +gl+ktLvfykgrap+g+k+dW+mheyrl
  GSBRNA2T00156597001 105 RDKIIYS-CVRRIGLRKTLVFYKGRAPHGQKSDWIMHEYRL 144
                          ******9.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-5612177IPR003441NAC domain
PROSITE profilePS5100555.37216177IPR003441NAC domain
PfamPF023654.8E-2717144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAENKVNLSI NGQSKVPPGF RFHPTEEELL HYYLRKKVHS QKIDLDVIRE VDLNKLEPWD  60
IQEECRIGSA PQTDWYFFSH KDKKYPTGTR TNRATVSGFW KATGRDKIIY SCVRRIGLRK  120
TLVFYKGRAP HGQKSDWIMH EYRLDETPTT NEYSDVVSED PMSYNEEGWV VCRVFRKKNY  180
QKIDDSPKIT LSSSPGDTEE KRKSTTSHNT HNGNVLDHVL LYMDRSCPNI CMPELQTTIQ  240
RQHNQDDILF MQLPSLETPK SEDLVYQSLK IPNQLDSSLV QEKKNGRPVC SNWASLDRLV  300
AWQLNNGHHK CDRASFDEEE EDGDTMMQRW DLHWSNDDHV DLWSSFTESS SSPSSLDPLL  360
HLSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-481617915170Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Stems and roots, specifically in interfascicular fibers (sclerenchyma), cells differentiating into vascular vessels (cambium), and xylem. {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:17114348, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17565617}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening and lignification of sclerenchymatous fibers and secondary xylem vessels (tracheary elements). Seems to repress the secondary cell wall thickening of xylary fibers. May also regulate the secondary cell wall lignification of other tissues. Binds to and activates the promoter of MYB46. {ECO:0000269|PubMed:17114348, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:17890373}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00156597001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747550.0KF974755.1 Brassica napus NAC transcription factor 12-1 (NAC12-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302980.10.0NAC domain-containing protein 12-like
SwissprotQ9LPI70.0NAC12_ARATH; NAC domain-containing protein 12
TrEMBLA0A0C4MXK40.0A0A0C4MXK4_BRANA; NAC12-1.1 protein
STRINGBra023288.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77828124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32770.10.0NAC domain containing protein 12
Publications ? help Back to Top
  1. Zhao Q, et al.
    Pinoresinol reductase 1 impacts lignin distribution during secondary cell wall biosynthesis in Arabidopsis.
    Phytochemistry, 2015. 112: p. 170-8
    [PMID:25107662]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Fernández-Pérez F,Vivar T,Pomar F,Pedreño MA,Novo-Uzal E
    Peroxidase 4 is involved in syringyl lignin formation in Arabidopsis thaliana.
    J. Plant Physiol., 2015. 175: p. 86-94
    [PMID:25506770]
  4. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  5. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  6. Huang J,Chen F,Wu S,Li J,Xu W
    Cotton GhMYB7 is predominantly expressed in developing fibers and regulates secondary cell wall biosynthesis in transgenic Arabidopsis.
    Sci China Life Sci, 2016. 59(2): p. 194-205
    [PMID:26803299]
  7. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]