PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00156289001 | ||||||||
Common Name | GSBRNA2T00156289001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 226aa MW: 25006.8 Da PI: 7.3897 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.2 | 5e-42 | 67 | 166 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+C ++Cvlapyfp ++p+kf ++h++FGasn++kll++lpe++r+da++s+vyeA ar+rdP+yG++g i +lq+q+++l GSBRNA2T00156289001 67 PCAACKILRRRCGDKCVLAPYFPPTEPAKFTIAHRVFGASNIIKLLQELPESQRTDAVNSMVYEAGARIRDPIYGCAGAIYNLQRQVSEL 156 7***************************************************************************************** PP DUF260 91 kaelallkee 100 +a+la+++ e GSBRNA2T00156289001 157 QAQLAKAQVE 166 *****99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.973 | 66 | 167 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.9E-42 | 67 | 164 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MASFMMSGGH LTLSIYTTYL PKSTSPSKHL IMLDMESKCD ASAAIISASP TSSPPPPQLS 60 PRLVLSPCAA CKILRRRCGD KCVLAPYFPP TEPAKFTIAH RVFGASNIIK LLQELPESQR 120 TDAVNSMVYE AGARIRDPIY GCAGAIYNLQ RQVSELQAQL AKAQVEIVSM QLQRSNLLEL 180 IHNMDQPNQE QHNMSFEKSN DFGFIEDNKY SNTIPSTLWC DPLWI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-41 | 66 | 168 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-41 | 66 | 168 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00156289001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018480879.1 | 1e-153 | PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 3e-99 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A291LQX5 | 1e-149 | A0A291LQX5_BRARR; Transcription factor LBD1a | ||||
TrEMBL | A0A3P5YC28 | 1e-149 | A0A3P5YC28_BRACM; Uncharacterized protein | ||||
STRING | Bo5g008590.1 | 1e-137 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-93 | LOB domain-containing protein 1 |
Publications ? help Back to Top | |||
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