PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00156283001 | ||||||||
Common Name | GSBRNA2T00156283001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 178aa MW: 20110.7 Da PI: 8.9848 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 45.6 | 1.5e-14 | 73 | 159 | 13 | 99 |
NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++d k ++P+ ri++i+++d+ +i +a l+ ka elfi ++ ++ + + k++ ++ ++++v++ + ++fl d vp++ GSBRNA2T00156283001 73 VEDAKMIRFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATELFIERFSEEAYGSSVQDKKKFIHYKHLSSVVSNEERYEFLADCVPEK 159 67889999****************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 9.47E-19 | 79 | 163 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.9E-21 | 80 | 143 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 6.0E-24 | 81 | 158 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 178 aa Download sequence Send to blast |
MVSSKKPNQE KKPKNGDGLN TRSSGSKTKK KTANKAKLKD VAEKEPEVHE ISESSSSEGR 60 RDEPKESNGV VVVEDAKMIR FPMNRIRRIM RSDNSAPQIM QDAVFLVNKA TELFIERFSE 120 EAYGSSVQDK KKFIHYKHLS SVVSNEERYE FLADCVPEKL KGEVALEEWE RSMTDVG* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.10946 | 0.0 | microspore-derived embryo| seed |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00156283001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC797147 | 1e-104 | KC797147.1 Brassica napus transcription factor subunit NF-YC10B (NF-YC10B) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009148047.1 | 1e-125 | PREDICTED: chromatin accessibility complex protein 1 | ||||
Refseq | XP_013646475.1 | 1e-125 | chromatin accessibility complex protein 1-like | ||||
TrEMBL | A0A3P5YUL1 | 1e-126 | A0A3P5YUL1_BRACM; Uncharacterized protein | ||||
STRING | Bra018668.1-P | 1e-124 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11190 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07980.1 | 2e-65 | nuclear factor Y, subunit C10 |
Publications ? help Back to Top | |||
---|---|---|---|
|