PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00156251001

Common Name

GSBRNA2T00156251001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 479aa MW: 53327.1 Da PI: 7.7585

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00156251001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.5	3.7e-10	174	215	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L GSBRNA2T00156251001 174 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQEL 215 5889*************************8766666655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.7E-7	171	248	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.289	173	217	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.2E-7	174	215	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.3E-8	174	218	No hit	No description
SuperFamily	SSF57959	7.03E-7	175	217	No hit	No description
CDD	cd14708	3.74E-23	175	227	No hit	No description
PROSITE pattern	PS00036	0	178	193	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.2E-28	256	331	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MATNHNHSHH LSYSLLHGLS NNPPPPGFIN QDGSSSFDFG ELEEAIVLQG VKYRNDETKP 60 PLFAGGGGAT TLEMFPSWPI RTHQTLPTEE SSKSEGESTD SGSANFSGKA ESQQPESPMS 120 NKQNHQLMLQ HQRNNNMANS TSTSGLPSTS RTPAPPKVSE DKRKATTSGK LLDAKTLRRL 180 AQNREAARKS RLRKKAYVQQ LESSRIKLSQ LEQELQRARS QGMFMGGCGP PGPNITSGAA 240 MFDMEYGRWL EEDNRHMSEI RTGLQAHLSD NDLRLIVDGY IAHFDEVLRL KAVAVKADVF 300 HLIIGTWMSP AERCFIWMAG FRPSDLIKIL VSQMDLLTEQ QLMGIYSLQH SSQQAEEALS 360 QGLEQLQQSL IDTLAASPVM DGMQQMAVAL GKISNLEGFI RQADNLRQQT VHQLRRILTV 420 RQAARCFLVI GEYYGRLRAL SSLWLSRPRE TLISDDTSCQ TTTDLQMVQS SRNHFSNF*

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MATNHNHSHH LSYSLLHGLS NNPPPPGFIN QDGSSSFDFG ELEEAIVLQG VKYRNDETKP  60
PLFAGGGGAT TLEMFPSWPI RTHQTLPTEE SSKSEGESTD SGSANFSGKA ESQQPESPMS  120
NKQNHQLMLQ HQRNNNMANS TSTSGLPSTS RTPAPPKVSE DKRKATTSGK LLDAKTLRRL  180
AQNREAARKS RLRKKAYVQQ LESSRIKLSQ LEQELQRARS QGMFMGGCGP PGPNITSGAA  240
MFDMEYGRWL EEDNRHMSEI RTGLQAHLSD NDLRLIVDGY IAHFDEVLRL KAVAVKADVF  300
HLIIGTWMSP AERCFIWMAG FRPSDLIKIL VSQMDLLTEQ QLMGIYSLQH SSQQAEEALS  360
QGLEQLQQSL IDTLAASPVM DGMQQMAVAL GKISNLEGFI RQADNLRQQT VHQLRRILTV  420
RQAARCFLVI GEYYGRLRAL SSLWLSRPRE TLISDDTSCQ TTTDLQMVQS SRNHFSNF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.24715	0.0	flower\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269\|PubMed:20805327}.
Uniprot	TISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269\|PubMed:20805327}.

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00156251001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ314757	0.0	AJ314757.1 Arabidopsis thaliana mRNA for bZIP transcription factor (AtbZIP21 gene).
GenBank	HQ132743	0.0	HQ132743.1 Arabidopsis thaliana bZIP21 (At1g08320) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013638917.1	0.0	PREDICTED: transcription factor TGA2 isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A3P6F109	0.0	A0A3P6F109_BRAOL; Uncharacterized protein
STRING	Bo5g008940.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5524	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]