PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00156121001
Common NameGSBRNA2T00156121001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-X1
Protein Properties Length: 1119aa    MW: 121785 Da    PI: 8.087
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00156121001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X123.89.8e-08321339119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG+H+C+k+CH GpC+pC+
  GSBRNA2T00156121001 321 CGRHQCEKTCHVGPCDPCQ 339
                          ******************6 PP
2zf-NF-X118.16e-06385402118
             zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                          CG+H C++ CH+GpC+ C
  GSBRNA2T00156121001 385 CGNHFCSEVCHPGPCGDC 402
                          ****************99 PP
3zf-NF-X125.62.6e-08444461118
             zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                          CG H+C++ CH G+CppC
  GSBRNA2T00156121001 444 CGLHTCNEVCHSGDCPPC 461
                          ****************** PP
4zf-NF-X118.64.1e-06542560119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG+H+C++lCH G CppC 
  GSBRNA2T00156121001 542 CGQHSCESLCHSGHCPPCL 560
                          ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.94E-6135212No hitNo description
PROSITE profilePS500168.92150211IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.524153209IPR001841Zinc finger, RING-type
PROSITE patternPS013590153208IPR019786Zinc finger, PHD-type, conserved site
CDDcd060085.31E-6242304No hitNo description
SMARTSM004380.21266284IPR000967Zinc finger, NF-X1-type
PfamPF014228.1268283IPR000967Zinc finger, NF-X1-type
CDDcd060081.43E-12311359No hitNo description
PfamPF014229.2E-6321338IPR000967Zinc finger, NF-X1-type
SMARTSM004386.4E-5321340IPR000967Zinc finger, NF-X1-type
CDDcd060083.73E-9375420No hitNo description
PfamPF014227.2E-5385402IPR000967Zinc finger, NF-X1-type
SMARTSM004382.6E-5385404IPR000967Zinc finger, NF-X1-type
CDDcd060081.04E-14434481No hitNo description
PfamPF014225.2E-7444461IPR000967Zinc finger, NF-X1-type
SMARTSM004382.9E-6444463IPR000967Zinc finger, NF-X1-type
PfamPF0142218503514IPR000967Zinc finger, NF-X1-type
SMARTSM0043877503534IPR000967Zinc finger, NF-X1-type
CDDcd060085.93E-10532584No hitNo description
PfamPF014221.0E-4542559IPR000967Zinc finger, NF-X1-type
SMARTSM004382.0E-4542561IPR000967Zinc finger, NF-X1-type
CDDcd060081.26E-6589636No hitNo description
PfamPF0142223599616IPR000967Zinc finger, NF-X1-type
SMARTSM004380.079599617IPR000967Zinc finger, NF-X1-type
PfamPF014220.0033652667IPR000967Zinc finger, NF-X1-type
SMARTSM004380.034652682IPR000967Zinc finger, NF-X1-type
CDDcd060088.37E-5680729No hitNo description
SMARTSM004380.014691712IPR000967Zinc finger, NF-X1-type
PfamPF014220.43692710IPR000967Zinc finger, NF-X1-type
PfamPF014242.2E-4824888IPR001374R3H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1119 aa     Download sequence    Send to blast
MSSQVRRDRR HQSSQQTWVP RGASTSVAVV NEPSHPPGND TAGVSESLAA GAASRPVYLG  60
RQHNGSVRPS YNQHQRNNNV AAPPPHNRQR RNNNAPGATL PDDNRQRVGS RTRPVYQGKR  120
VAKEDNIALT NPNLPQLLVQ EIQEKLVKSS IECMICYDKV GRTANIWSCS SCYSIFHMHC  180
IKKWARAPTS IDLLAEKNQG DNWRCPGCQS VQLTSSREIC YRCFCGKRKD PPADPYLTPH  240
SCGEPCGKPL EKELFAGAET TSEDLCPHIC VLQCHPGPCP PCKAFAPPRS CPCGKKTVHT  300
RCSERRSLLV CGQRCEKLLN CGRHQCEKTC HVGPCDPCQV LVNATCFCKK KVETIICGDM  360
NVKGELKAED GVYSCNLNCG KPLGCGNHFC SEVCHPGPCG DCDLLPGRVK TCYCGKTRLE  420
EQTRQSCLDP IPSCSNICSK LLPCGLHTCN EVCHSGDCPP CLVQVNQKCR CGSTSRTVEC  480
YITTSSETDK FVCSKPCGRK KNCGRHRCSE RCCPLLNAKK NDLSGDWDEH VCQLPCGKKL  540
RCGQHSCESL CHSGHCPPCL EMIFTDLTCA CGNTSIPPPL PCGTPVPSCQ LPCSIPQPCG  600
HSATHGCHFG DCPPCSAPVE KKCVGGHVVL RNIPCGLKDI RCNKICGKTR RCGMHACART  660
CHPEACDTYS ESEPGLRVTC GQTCSAPRRD CRHTCAALCH PSQPCPDSRC EFPVTITCSC  720
GRITATVPCD AGGGSTSNLS VDSIYEASVL QKLPTTLQPV ESSGNRIPLG QRKLSCDDEC  780
AKLERKRVLQ DAFDITPPNL DSLHFSENAA MTEIISDIYR RDPKWVLAVE ERFKFLVLGK  840
ARGSTSTLKV HVFCPMQKNK RDTVRLLAER WKLAVSNAGW EPKRFTVVHV TQKSKTPTRI  900
IGARGGAISL GGPHPPSFDP LVDMDPRLVV SLLDLPREAN ISALVLRFGG ECELVWLNDK  960
NALAVFHDHA RAATAMRRLD HGSVYHGAVV VQNGPQSPSL GGNAWGKLPS SSSWDVQKAN  1020
PWKKAVIQES DENWGAEDSP IGGSSTDIQA AAWRSATSNT PVVTSVNRWS VLEPEKPNTS  1080
GLQPLVQTEG SSSSKAAGKQ PVEGSSEEVV DDWEKVCD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.166120.0leaf| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00156121001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013640936.10.0NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A3P5YCW40.0A0A3P5YCW4_BRACM; Uncharacterized protein
STRINGBra019958.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]