PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00155911001
Common NameGSBRNA2T00155911001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 252aa    MW: 28317.1 Da    PI: 10.0975
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00155911001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.11.8e-13179222547
                          CHHHCHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKka.eieeLeekvkeLeaeNkaLkk 47 
                          ++++r++kNRe+A rsR+RK++ ++ eLe kv  Le+eN++L+ 
  GSBRNA2T00155911001 179 RKQKRMIKNRESAARSRARKQQaYTHELEIKVSRLEEENERLRR 222
                          689*****************75499*****************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.6E-12172223No hitNo description
SMARTSM003382.6E-8175249IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.76177223IPR004827Basic-leucine zipper domain
PfamPF001702.3E-10179223IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.85E-8179225No hitNo description
CDDcd147071.69E-20179234No hitNo description
PROSITE patternPS000360182197IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDSQREPRSH QSLNRQGSLY SLTLDEVQTH LGSSGKALGS MNLDELLKSV CSGSLTFPRD  60
LSKKTVEEVW KDIQQDKNGG GSGHERRDKQ PTLGEMTLED LLLKAGVVTE TQNIAQVAPW  120
VQYHQLPSMP QPQSFMPYPV ADMQTMVSQS SLMGGLSDTQ TPGRKRVASG EVVEKTVERK  180
QKRMIKNRES AARSRARKQQ AYTHELEIKV SRLEEENERL RRQKEVEKIL PSAPPPLDPK  240
RQLRRTSSAP F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191199ARSRARKQQ
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00409DAPTransfer from AT3G56850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00155911001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1228990.0JX122899.1 Brassica napus ABA-responsive element binding factor AREB3.2 (AREB3.2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302930.11e-174ABSCISIC ACID-INSENSITIVE 5-like protein 2
SwissprotQ9LES31e-151AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLX2C2101e-173X2C210_BRANA; ABA-responsive element binding factor AREB3.2
STRINGBo8g091160.11e-170(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18842883
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.11e-138ABA-responsive element binding protein 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]
  3. Song C,Kim T,Chung WS,Lim CO
    The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions.
    Mol. Cells, 2017. 40(8): p. 577-586
    [PMID:28756655]