PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00155673001 | ||||||||
Common Name | GSBRNA2T00155673001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 136aa MW: 15244.3 Da PI: 9.9899 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.5 | 1.3e-31 | 24 | 74 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++g+lyey+s GSBRNA2T00155673001 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYAS 74 79***********************************************86 PP | |||||||
2 | K-box | 21.3 | 1.1e-08 | 96 | 124 | 8 | 36 |
K-box 8 sleeakaeslqqelakLkkeienLqreqR 36 ++ea+++++qqe++kL+++i+ +q+++R GSBRNA2T00155673001 96 TVTEANTQYYQQEASKLRRQIRDIQNSNR 124 4899*********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.641 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-40 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.09E-45 | 17 | 90 | No hit | No description |
SuperFamily | SSF55455 | 1.1E-33 | 17 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-33 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 18 | 72 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-26 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-33 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-33 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MDESGSSHDA ESSKKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60 VIFSTRGRLY EYASNSVKGT IERYKKACSD AVNPPTVTEA NTQYYQQEAS KLRRQIRDIQ 120 NSNRIVSLVN LLGIV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 7e-22 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 7e-22 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 7e-22 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 7e-22 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_A | 7e-22 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 7e-22 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 7e-22 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 7e-22 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 7e-22 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 7e-22 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00155673001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY036062 | 0.0 | AY036062.1 Brassica napus SHATTERPROOF1 (BnSHP1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013605337.1 | 4e-86 | PREDICTED: agamous-like MADS-box protein AGL1 isoform X1 | ||||
Refseq | XP_013605338.1 | 4e-86 | PREDICTED: agamous-like MADS-box protein AGL1 isoform X1 | ||||
Refseq | XP_013605339.1 | 4e-86 | PREDICTED: agamous-like MADS-box protein AGL1 isoform X1 | ||||
Refseq | XP_013605340.1 | 6e-87 | PREDICTED: agamous-like MADS-box protein AGL1 isoform X2 | ||||
Refseq | XP_013663681.1 | 4e-86 | agamous-like MADS-box protein AGL1 | ||||
Swissprot | P29381 | 6e-84 | AGL1_ARATH; Agamous-like MADS-box protein AGL1 | ||||
TrEMBL | A0A0D3DU90 | 5e-94 | A0A0D3DU90_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g092930.1 | 9e-95 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58780.1 | 7e-74 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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