PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00155673001
Common NameGSBRNA2T00155673001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 136aa    MW: 15244.3 Da    PI: 9.9899
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00155673001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.51.3e-312474151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++g+lyey+s
  GSBRNA2T00155673001 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYAS 74
                         79***********************************************86 PP
2K-box21.31.1e-0896124836
                K-box   8 sleeakaeslqqelakLkkeienLqreqR 36 
                           ++ea+++++qqe++kL+++i+ +q+++R
  GSBRNA2T00155673001  96 TVTEANTQYYQQEASKLRRQIRDIQNSNR 124
                          4899*********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.6411676IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-401675IPR002100Transcription factor, MADS-box
CDDcd002656.09E-451790No hitNo description
SuperFamilySSF554551.1E-331789IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-331838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003191.1E-262572IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-335374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MDESGSSHDA ESSKKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
VIFSTRGRLY EYASNSVKGT IERYKKACSD AVNPPTVTEA NTQYYQQEAS KLRRQIRDIQ  120
NSNRIVSLVN LLGIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-221684169Myocyte-specific enhancer factor 2B
1tqe_Q7e-221684169Myocyte-specific enhancer factor 2B
1tqe_R7e-221684169Myocyte-specific enhancer factor 2B
1tqe_S7e-221684169Myocyte-specific enhancer factor 2B
6c9l_A7e-221684169Myocyte-specific enhancer factor 2B
6c9l_B7e-221684169Myocyte-specific enhancer factor 2B
6c9l_C7e-221684169Myocyte-specific enhancer factor 2B
6c9l_D7e-221684169Myocyte-specific enhancer factor 2B
6c9l_E7e-221684169Myocyte-specific enhancer factor 2B
6c9l_F7e-221684169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00155673001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0360620.0AY036062.1 Brassica napus SHATTERPROOF1 (BnSHP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013605337.14e-86PREDICTED: agamous-like MADS-box protein AGL1 isoform X1
RefseqXP_013605338.14e-86PREDICTED: agamous-like MADS-box protein AGL1 isoform X1
RefseqXP_013605339.14e-86PREDICTED: agamous-like MADS-box protein AGL1 isoform X1
RefseqXP_013605340.16e-87PREDICTED: agamous-like MADS-box protein AGL1 isoform X2
RefseqXP_013663681.14e-86agamous-like MADS-box protein AGL1
SwissprotP293816e-84AGL1_ARATH; Agamous-like MADS-box protein AGL1
TrEMBLA0A0D3DU905e-94A0A0D3DU90_BRAOL; Uncharacterized protein
STRINGBo8g092930.19e-95(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.17e-74MIKC_MADS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Matalon O, et al.
    Dephosphorylation of the adaptor LAT and phospholipase C-γ by SHP-1 inhibits natural killer cell cytotoxicity.
    Sci Signal, 2016. 9(429): p. ra54
    [PMID:27221712]
  3. Ehlers K, et al.
    The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana.
    PLoS ONE, 2016. 11(10): p. e0165075
    [PMID:27776173]