PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00155548001

Common Name

GSBRNA2T00155548001, LOC106415787

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

BBR-BPC

Protein Properties

Length: 302aa MW: 34031.4 Da PI: 10.0921

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00155548001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	354.2	2.8e-108	1	301	1	301
GAGA_bind 1 mdddgsrernkgyye............paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverd 78 mdd g+r+ g+++ + ++ ++ +q+ms+iaerda+i+ernla+sekkaa+aerdmaflqrd+a+aern+a++erd GSBRNA2T00155548001 1 MDDGGHRD--NGWHKashgkqwmmqqhQ-PQQHQPSMKQVMSIIAERDAAIQERNLAISEKKAALAERDMAFLQRDTAIAERNNAIMERD 87 77777744..444444455666665431.344444556************************************************** PP GAGA_bind 79 nkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkk 168 ++l+al++++ s++++ ++ +i+ +qq++ q++++a+e+re+e++ +p++ ++ + +++k + a+k k+++k+k GSBRNA2T00155548001 88 SALAALQFRDSSMSTSR-------QHQPHIH-HQQHHMLQVTENAYETRETETSPPPPTKPKRGRKAKEPKAP--A-ANKRGPKTQRKVK 166 ****998854433.......3444555.4444669*********888888655554444444433..2.2223333445666 PP GAGA_bind 169 kksekskkkvkkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiag 257 k++e++ k +++ + sk++++s++ +ln v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S++PLP+ +++++aR++g GSBRNA2T00155548001 167 KENEDDLTKLMFDEEATGSKSDWRSQETvGLNRVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMHPLPALPNKKHARVGG 256 666677677777776689***99659******************************************************** PP GAGA_bind 258 rKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301 rKmS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+ GSBRNA2T00155548001 257 RKMSGSAFSKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 301 ***************88*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	2.0E-137	1	301	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	3.1E-101	1	301	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MDDGGHRDNG WHKASHGKQW MMQQHQPQQH QPSMKQVMSI IAERDAAIQE RNLAISEKKA 60 ALAERDMAFL QRDTAIAERN NAIMERDSAL AALQFRDSSM STSRQHQPHI HHQQHHMLQV 120 TENAYETRET ETSPPPPTKP KRGRKAKEPK APAANKRGPK TQRKVKKENE DDLTKLMFDE 180 EATGSKSDWR SQETVGLNRV VYDETTMPPP VCSCTGVLRQ CYKWGNGGWQ SSCCTTTLSM 240 HPLPALPNKK HARVGGRKMS GSAFSKLLSR LAAEGHHDLS NPVDLKDHWA KHGTNRYITI 300 K*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.10021	0.0	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:21435046}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00155548001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013605870.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
Refseq	XP_013605871.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
Refseq	XP_013605872.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
Refseq	XP_013605873.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
Refseq	XP_013605874.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
Refseq	XP_013712022.1	0.0	protein BASIC PENTACYSTEINE6 isoform X1
Refseq	XP_013712023.1	0.0	protein BASIC PENTACYSTEINE6 isoform X1
Refseq	XP_013712024.1	0.0	protein BASIC PENTACYSTEINE6 isoform X1
Refseq	XP_022563820.1	0.0	protein BASIC PENTACYSTEINE6 isoform X1
Swissprot	Q8L999	1e-162	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A3P6GPU2	0.0	A0A3P6GPU2_BRAOL; Uncharacterized protein
STRING	Bra007518.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6169	26	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	1e-138	basic pentacysteine 6

Link Out ? help Back to Top
Entrez Gene	106415787

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]