PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00155318001
Common NameGSBRNA2T00155318001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 949aa    MW: 106737 Da    PI: 8.1565
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00155318001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00147395123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C+k+F ++  L  H  +H
  GSBRNA2T00155318001 73 FQCKGCKKVFASHQALGGHRASH 95
                         89*************99999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.9E-87297IPR007087Zinc finger, C2H2
SuperFamilySSF576675.9E-57295No hitNo description
SMARTSM003550.277395IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.84773100IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SuperFamilySSF576675.9E-5138165No hitNo description
PfamPF139124.5E-12142166IPR007087Zinc finger, C2H2
SMARTSM003550.51143165IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307143165IPR007087Zinc finger, C2H2
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
PROSITE profilePS513755.349351381IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.224389423IPR002885Pentatricopeptide repeat
PfamPF015351.4E-5393421IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.0E-6393424IPR002885Pentatricopeptide repeat
PfamPF130419.9E-17423473IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.547424454IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.2E-7426461IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.139460490IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.0E-8462492IPR002885Pentatricopeptide repeat
PfamPF130411.5E-16491540IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.397492526IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.3E-9494528IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.6E-4496712IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137510.457528562IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.6E-7530555IPR002885Pentatricopeptide repeat
PfamPF015350.51561584IPR002885Pentatricopeptide repeat
PfamPF130418.8E-11590634IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.512591625IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.3E-6593618IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.6E-4625654IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.993626656IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.213664694IPR002885Pentatricopeptide repeat
PfamPF015350.3667696IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.865698732IPR002885Pentatricopeptide repeat
PfamPF015350.022701729IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0017701733IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.262733767IPR002885Pentatricopeptide repeat
PfamPF015350.54737763IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.982768802IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.152803837IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.572871905IPR002885Pentatricopeptide repeat
PfamPF015350.042876902IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 949 aa     Download sequence    Send to blast
MDSSYTDFVM FNSQGQHDEG NMSRLPWKRV RDEDEELANC LVLLSNSGNA YNNNEHGHIK  60
DKNVKKRKTG HVFQCKGCKK VFASHQALGG HRASHKKVKG CFASQDKKAE EEEEEEYEEE  120
EEEEEEEEED KPHITTRKRS NAHECTICHR VFSSGQALGG HKRCHWLTPS TNYLRMKPLN  180
DSSTHHHHSQ PLDQPSLDLS LACVDPTVMT IGRDGGGNNH NATTSSNSWL KLASERRRFT  240
SSSTSPHFGI NQSTIFSPLF FSVIVLPSAM ARGSGLHALF APKPQRTESK LATSLARAIN  300
SSDQVESSLS SLQPLSLSTT TVLQTLRLIT HPPRALRFFD YLSTTNAFSH NPHSFFLMLH  360
LLSQSRSLNA ARNFLFSIEK RSNGSVKLHP RFFNTLIKSY ADAGLLHESL SLFHTMKKMG  420
VSPSLVTFNT LLSILLRRGK TGMALDLFRE MRRTYGVKPD CYTFNILING FCKNSMVAEA  480
FRVFKDMECV PDLVTYNTII NGLCRAGKVN TAHNVLKGMV KRGVVEPNVV SYTTLVRGYC  540
MNREVDKALD VFREIDKPNA VSFNTLIKGL SEAQRFDEIK EVLRASSFAP DACTFNVLIK  600
AHCDGGDMDA AVKVFKEMAR PDSASFSVLI RALCLRQEFD RAERLFDELY DKGVLLEKGG  660
SKPLAAAYNP MFEYLCANGK TRRAERVFRQ LMKIGVQDPP SYGTLIMGHC REGGFKGGYE  720
LLVLMLRREF VPDFEIYELL IDGLLKTGEA LLAHDVLERM LRSSYLPVAA TFHCVLGELV  780
KGGFANECFD LVRIMLEKGI RQSIDLSTDV VRLLFSSGQK DKAFLVVRLV YENGYVVKME  840
ELIDFLCENR KLVDSAHRLV LFCLENNQMI DISRCNRVLE GLCKVKRHSE AFSLYNELVE  900
IGKHQELSCH VVLRNALEAA GKLEEVKFVS KRMAVLDDCY GLKQGISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A3e-7831092511427pentatricopeptide repeat protein dPPR-U10
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16167KNVKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00155318001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895100.0AC189510.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB089D07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013698586.10.0pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like
SwissprotO819080.0PPR2_ARATH; Pentatricopeptide repeat-containing protein At1g02060, chloroplastic
TrEMBLA0A3P6CRU30.0A0A3P6CRU3_BRAOL; Uncharacterized protein
STRINGBo4g187280.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64100.24e-42pentatricopeptide (PPR) repeat-containing protein
Publications ? help Back to Top
  1. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]
  2. Allen E, et al.
    Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana.
    Nat. Genet., 2004. 36(12): p. 1282-90
    [PMID:15565108]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]