PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00154915001
Common NameGSBRNA2T00154915001, LOC106360087
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 307aa    MW: 34926.3 Da    PI: 7.0816
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00154915001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.3e-35191112103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F+ k+y++++d++++ li+w    nsf+v d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k
  GSBRNA2T00154915001  19 FVAKTYQMVNDPSTDWLITWGPAHNSFIVADPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEHFLRGQK 99 
                          9********************999*****************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i r+k++
  GSBRNA2T00154915001 100 HLLKNITRRKHA 111
                          *********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.1E-5615108IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.84E-3416108IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.6E-3816108IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.2E-3119108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-181942IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-185769IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-187082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEDKNNNTTS TNTNVIAPFV AKTYQMVNDP STDWLITWGP AHNSFIVADP LDFSQRILPA  60
YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NEHFLRGQKH LLKNITRRKH ARGMMDVEDG  120
EIVKEIERLR DEQRELELEI QRMNQRIEAT EKRPEQMMAF LYKVVDDPDL LPRMMLEKER  180
LVSDKKKRRV TVKSEEGAEE EERVFGVVSP SPSPPENSIG WVVPMQRQGT FGSYYNETGM  240
VANSMRSTSS KSSSLTSTLS LPESVNGGCG SVQGETRDKK AATFGGVVES NPQTPPYPFS  300
LFRGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-261610817120Heat shock factor protein 1
5d5u_B9e-261610826129Heat shock factor protein 1
5d5v_B9e-261610826129Heat shock factor protein 1
5d5v_D9e-261610826129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184188KKKRR
2184189KKKRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.117902e-85seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00154915001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013655140.10.0heat stress transcription factor C-1
SwissprotQ9LV521e-141HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLM4D9U30.0M4D9U3_BRARP; Uncharacterized protein
STRINGBra013253.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67752743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-127heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]