PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00154756001

Common Name

GSBRNA2T00154756001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CPP

Protein Properties

Length: 559aa MW: 60714.1 Da PI: 8.0657

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00154756001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	46.2	9.3e-15	138	177	1	41
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++kk+CnCk+s+Clk+YCeCfa+g++C+ C+C +C+N+ + GSBRNA2T00154756001 138 QKKKHCNCKHSRCLKLYCECFASGTYCDG-CNCVNCFNNVD 177 589************************.******986 PP
2	TCR	51.2	2.5e-16	220	258	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 k++kgCnCkks ClkkYCeCf+a+ Cse+CkC dCkN GSBRNA2T00154756001 220 KHNKGCNCKKSGCLKKYCECFQANILCSENCKCLDCKNF 258 589***********************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	5.5E-17	138	178	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.058	139	260	IPR005172	CRC domain
Pfam	PF03638	5.9E-11	140	175	IPR005172	CRC domain
SMART	SM01114	7.5E-19	220	261	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	7.5E-13	223	258	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence Send to blast
MFKRRGRRDA VEDEEEEEEE QNPNSEITLR KPRSMGNAGG GGKLPPKNDG GFGVPARDPA 60 TQLDLTGGSD QHSLSKPAPT VVSPAAVTSS VPSPVTVTTS RLHPVATSQS QILNAPVRLP 120 KQESPKSRPR PIVDGTPQKK KHCNCKHSRC LKLYCECFAS GTYCDGCNCV NCFNNVDNEP 180 SRRDAVEATL ERNPNAFRPK IASSPHGVRD KREEMVLLGK HNKGCNCKKS GCLKKYCECF 240 QANILCSENC KCLDCKNFDG SEERRALFHG ELANNMAYLQ QAANAAITGA VGSSGFAPYP 300 APKRRKGGQD ISFNQATTDT SPATGPSKFV YRSLLADVIQ PQDVKALCSV LVAVAGEAAK 360 ALTDKRNDNR VEDQTETSLA SSAQENSQGD VEMAEPDGNQ ADKSRRKPLS PSTLALMCDD 420 EQDTIFMVAA SEPNGSVDPS WCRTNSQGQS QDYAELERVV LTKLRDCLSR LISYAELKES 480 KRSYLARRHI QSPPSATETV KMENGIQQAP PIVNGATTQP TVNKPQLLQP MQTTTNTSST 540 HHPHKPPALP EKKDPLNQ*

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence Send to blast

MFKRRGRRDA VEDEEEEEEE QNPNSEITLR KPRSMGNAGG GGKLPPKNDG GFGVPARDPA  60
TQLDLTGGSD QHSLSKPAPT VVSPAAVTSS VPSPVTVTTS RLHPVATSQS QILNAPVRLP  120
KQESPKSRPR PIVDGTPQKK KHCNCKHSRC LKLYCECFAS GTYCDGCNCV NCFNNVDNEP  180
SRRDAVEATL ERNPNAFRPK IASSPHGVRD KREEMVLLGK HNKGCNCKKS GCLKKYCECF  240
QANILCSENC KCLDCKNFDG SEERRALFHG ELANNMAYLQ QAANAAITGA VGSSGFAPYP  300
APKRRKGGQD ISFNQATTDT SPATGPSKFV YRSLLADVIQ PQDVKALCSV LVAVAGEAAK  360
ALTDKRNDNR VEDQTETSLA SSAQENSQGD VEMAEPDGNQ ADKSRRKPLS PSTLALMCDD  420
EQDTIFMVAA SEPNGSVDPS WCRTNSQGQS QDYAELERVV LTKLRDCLSR LISYAELKES  480
KRSYLARRHI QSPPSATETV KMENGIQQAP PIVNGATTQP TVNKPQLLQP MQTTTNTSST  540
HHPHKPPALP EKKDPLNQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-32	140	269	11	132	Protein lin-54 homolog
5fd3_B	1e-32	140	269	11	132	Protein lin-54 homolog
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269\|PubMed:18057042}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00154756001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118658	1e-167	AK118658.1 Arabidopsis thaliana At4g29000 mRNA for putative transcription factor, complete cds, clone: RAFL19-93-A20.
GenBank	BT005931	1e-167	BT005931.1 Arabidopsis thaliana At4g29000 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013596271.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 5
Refseq	XP_013705473.1	0.0	protein tesmin/TSO1-like CXC 5
Swissprot	Q9SZD1	0.0	TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBL	A0A3P6F4W3	0.0	A0A3P6F4W3_BRAOL; Uncharacterized protein
STRING	Bo7g113450.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1783	28	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]