PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00154690001
Common NameGSBRNA2T00154690001, LOC106410067
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 233aa    MW: 26666.5 Da    PI: 6.6691
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00154690001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind27.11.1e-0824108297
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Flkk y i++d++++++i w  ngns++v+ +  ++    +++  hs   S  R    YgF+++ + ++        +e++++ F +g+ 
  GSBRNA2T00154690001  24 FLKKAYAIVNDPSTDSMILWGPNGNSLIVHRPLPLEY--TESFLFHSGALSMER-FVAYGFTMTVSGSQ--------VEYANDDFVRGQP 102
                          9******************************999988..556666888888877.568***99988775........7************ PP

                          XXXXXX CS
         HSF_DNA-bind  92 elleki 97 
                          + l ki
  GSBRNA2T00154690001 103 QRLGKI 108
                          999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.4E-520111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-921105IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.17E-921108IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-724108IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004151.2E-6143225IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.1E-6147219IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-5148224IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.17E-10148223IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEFTRDEAFD RALLRDIKDR VFYFLKKAYA IVNDPSTDSM ILWGPNGNSL IVHRPLPLEY  60
TESFLFHSGA LSMERFVAYG FTMTVSGSQV EYANDDFVRG QPQRLGKICD PFVARVKQDI  120
ELRFKQDNDR KRHWEELRSY GMVVELFKHI YSVVDDPATN SFISWGPNGK SFIVLDPQRC  180
ACYCFPYNLL EECGFTKTVS GSQVEFASEN FVAGKPELIK KISEKHKPAM IA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00154690001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894411e-123AC189441.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069M23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013706023.11e-175heat stress transcription factor C-1
TrEMBLA0A0D3DGH81e-173A0A0D3DGH8_BRAOL; Uncharacterized protein
STRINGBo7g111770.11e-174(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142121123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.15e-21HSF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]