PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00154688001
Common NameGSBRNA2T00154688001, LOC106409207
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 325aa    MW: 37000.3 Da    PI: 4.4841
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00154688001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-19115165155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr+++ +g+++AeIrdp++   r+r++lg+f taeeAa  +++a+ +l+g
  GSBRNA2T00154688001 115 KKFRGVRRRP-WGKYAAEIRDPVQ---RRRIWLGTFSTAEEAAIVYDNAAIRLRG 165
                          59********.**********755...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.92E-32115172No hitNo description
PfamPF008471.0E-10116165IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-21116173IPR016177DNA-binding domain
PROSITE profilePS5103222.721116173IPR001471AP2/ERF domain
SMARTSM003801.0E-38116179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-28116173IPR001471AP2/ERF domain
PRINTSPR003672.2E-9117128IPR001471AP2/ERF domain
PRINTSPR003672.2E-9139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MMMDEYMDFR PVKYTEHKKV IKKYTKKLPV EENKRKNSTT GRDSARLVRL CVMDGDATDS  60
SSDDEEEFMF PRRRVKRLIN EIRVEPSSSS DEVSALAVDS PPQMVSVSGA DQNQKKFRGV  120
RRRPWGKYAA EIRDPVQRRR IWLGTFSTAE EAAIVYDNAA IRLRGPDALT NFTVPPEPEP  180
EPDRESNVSV YSTLESVEDS HHHLSSPTSV LNYRISEPVD EPVKPVKQEF IEPEPISWHL  240
EEVNCSFPLD IPFPDNYFTE TLEDISIFDQ SMSPIQSSES NFFDDLMVFD NSNIGGESYS  300
SKIKEIGSIF NDLDDSLISE LLVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21115172159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-21115172462ATERF1
3gcc_A2e-21115172462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00154688001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0355246e-66AL035524.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T13J8 (ESSAII project).
GenBankAL1615726e-66AL161572.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68.
GenBankAY5608726e-66AY560872.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g27950) mRNA, complete cds.
GenBankBT0330886e-66BT033088.1 Arabidopsis thaliana unknown protein (At4g27950) mRNA, complete cds.
GenBankCP0026876e-66CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013705330.10.0ethylene-responsive transcription factor CRF4
SwissprotQ9SUE31e-147CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A0D3DGH70.0A0A0D3DGH7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EWR50.0A0A3P6EWR5_BRAOL; Uncharacterized protein
STRINGBo7g111760.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-138cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  4. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]